CRISPRone

CRISPRone report for GCA_016094015.1_ASM1609401v1

♦ Seq 1: VBZW01000009.1 Clostridioides difficile strain GV587 822_S12_L001_R1_001__paired__contig_9, whole genome shotgun sequence

⇒Summary: seq-len = 399507 bp; # of CRISPR array = 2; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 2817-2976 bp 2 Locus 2: 53889-55295 bp Zoom in on locus 1 x3 Zoom in on locus 2 x22 CRISPR array Location: 2817-2976 bp Num of repeats: 3 Spacers: s1-s2 CRISPR array Location: 2817-2976 bp Num of repeats: 3 Spacers: s1-s2 CRISPR array Location: 53889-55295 bp Num of repeats: 22 Spacers: s3-s23 CRISPR array Location: 53889-55295 bp Num of repeats: 22 Spacers: s3-s23 Sorry, your browser does not support inline SVG.

Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 2817-2976 bp]: array | spacers
           [Locus range 53889-55295 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 2: VBZW01000008.1 Clostridioides difficile strain GV587 822_S12_L001_R1_001__paired__contig_8, whole genome shotgun sequence

⇒Summary: seq-len = 432099 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 318358-319448 bp Zoom in on locus 1 x17 CRISPR array Location: 318358-319448 bp Num of repeats: 17 Spacers: s1-s16 CRISPR array Location: 318358-319448 bp Num of repeats: 17 Spacers: s1-s16 Sorry, your browser does not support inline SVG.

Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 318358-319448 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 3: VBZW01000001.1 Clostridioides difficile strain GV587 822_S12_L001_R1_001__paired__contig_1, whole genome shotgun sequence

⇒Summary: seq-len = 494105 bp; # of CRISPR array = 2; # of cas gene = 6  (type I, III) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 244601-245159 bp 2 Locus 2: 318426-326291 bp 3 Locus 3: 488242-489257 bp Zoom in on locus 1 x9 Zoom in on locus 2 Zoom in on locus 3 x16 CRISPR array Location: 244601-245159 bp Num of repeats: 9 Spacers: s1-s8 CRISPR array Location: 244601-245159 bp Num of repeats: 9 Spacers: s1-s8 Gene: mkCas0101:csm2gr11 Type: Subtype-III-D Location: 318426-319535 bp Gene: pfam01881:cas6 Type: other Location: 319793-320530 bp Gene: pfam09706:cas8b2 Type: Subtype-I-B Location: 320535-322010 bp Gene: cd09687:cas7 Type: Subtype-I-B Location: 322030-323043 bp Gene: cd09693:cas5 Type: Type-I Location: 323059-323856 bp Gene: cd09641:cas3HD Type: Type-I Location: 323883-326291 bp CRISPR array Location: 488242-489257 bp Num of repeats: 16 Spacers: s9-s23 CRISPR array Location: 488242-489257 bp Num of repeats: 16 Spacers: s9-s23 Sorry, your browser does not support inline SVG.

Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 244601-245159 bp]: array | spacers
           [Locus range 488242-489257 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 4: VBZW01000005.1 Clostridioides difficile strain GV587 822_S12_L001_R1_001__paired__contig_5, whole genome shotgun sequence

⇒Summary: seq-len = 550441 bp; # of CRISPR array = 0; # of cas gene = 9  (type I) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 540893-550247 bp Zoom in on locus 1 Gene: pfam13280:WYL Type: other Location: 540893-541780 bp Gene: pfam01881:cas6 Type: other Location: 541858-542595 bp Gene: cd09665:cas8b2 Type: Subtype-I-B Location: 542601-544478 bp Gene: cd09687:cas7 Type: Subtype-I-B Location: 544480-545394 bp Gene: cd09658:cas5 Type: Subtype-I-B Location: 545396-546097 bp Gene: COG1203:cas3 Type: Type-I Location: 546108-548429 bp Gene: pfam01930:cas4 Type: Type-I Location: 548444-548995 bp Gene: cd09722:cas1 Type: universal Location: 548998-549978 bp Gene: cd09725:cas2 Type: universal Location: 549981-550247 bp Sorry, your browser does not support inline SVG.

Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)