CRISPRone

CRISPRone report for GCA_016094025.1_ASM1609402v1

♦ Seq 1: VBZX01000006.1 Clostridioides difficile strain GV597 791_S11_L001_R1_001__paired__contig_6, whole genome shotgun sequence

⇒Summary: seq-len = 645869 bp; # of CRISPR array = 3; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 135535-136624 bp 2 Locus 2: 246927-247221 bp 3 Locus 3: 455326-455684 bp Zoom in on locus 1 x17 Zoom in on locus 2 x5 Zoom in on locus 3 x6 CRISPR array Location: 135535-136624 bp Num of repeats: 17 Spacers: s1-s16 CRISPR array Location: 135535-136624 bp Num of repeats: 17 Spacers: s1-s16 CRISPR array Location: 246927-247221 bp Num of repeats: 5 Spacers: s17-s20 CRISPR array Location: 246927-247221 bp Num of repeats: 5 Spacers: s17-s20 CRISPR array Location: 455326-455684 bp Num of repeats: 6 Spacers: s21-s25 CRISPR array Location: 455326-455684 bp Num of repeats: 6 Spacers: s21-s25 Sorry, your browser does not support inline SVG.

Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 135535-136624 bp]: array | spacers
           [Locus range 246927-247221 bp]: array | spacers
           [Locus range 455326-455684 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 2: VBZX01000003.1 Clostridioides difficile strain GV597 791_S11_L001_R1_001__paired__contig_3, whole genome shotgun sequence

⇒Summary: seq-len = 1274015 bp; # of CRISPR array = 5; # of cas gene = 6  (type I, III) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 244453-245011 bp 2 Locus 2: 318278-326143 bp 3 Locus 3: 488094-489109 bp 4 Locus 4: 864417-865626 bp 5 Locus 5: 916538-916698 bp 6 Locus 6: 1234524-1235739 bp Zoom in on locus 1 x9 Zoom in on locus 2 Zoom in on locus 3 x16 Zoom in on locus 4 x19 Zoom in on locus 5 x3 Zoom in on locus 6 x19 CRISPR array Location: 244453-245011 bp Num of repeats: 9 Spacers: s1-s8 CRISPR array Location: 244453-245011 bp Num of repeats: 9 Spacers: s1-s8 Gene: mkCas0101:csm2gr11 Type: Subtype-III-D Location: 318278-319387 bp Gene: pfam01881:cas6 Type: other Location: 319645-320382 bp Gene: pfam09706:cas8b2 Type: Subtype-I-B Location: 320387-321862 bp Gene: cd09687:cas7 Type: Subtype-I-B Location: 321882-322895 bp Gene: cd09693:cas5 Type: Type-I Location: 322911-323708 bp Gene: cd09641:cas3HD Type: Type-I Location: 323735-326143 bp CRISPR array Location: 488094-489109 bp Num of repeats: 16 Spacers: s9-s23 CRISPR array Location: 488094-489109 bp Num of repeats: 16 Spacers: s9-s23 CRISPR array Location: 864417-865626 bp Num of repeats: 19 Spacers: s24-s41 CRISPR array Location: 864417-865626 bp Num of repeats: 19 Spacers: s24-s41 CRISPR array Location: 916538-916698 bp Num of repeats: 3 Spacers: s42-s43 CRISPR array Location: 916538-916698 bp Num of repeats: 3 Spacers: s42-s43 CRISPR array Location: 1234524-1235739 bp Num of repeats: 19 Spacers: s44-s61 CRISPR array Location: 1234524-1235739 bp Num of repeats: 19 Spacers: s44-s61 Sorry, your browser does not support inline SVG.

Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 244453-245011 bp]: array | spacers
           [Locus range 488094-489109 bp]: array | spacers
           [Locus range 864417-865626 bp]: array | spacers
           [Locus range 916538-916698 bp]: array | spacers
           [Locus range 1234524-1235739 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 3: VBZX01000001.1 Clostridioides difficile strain GV597 791_S11_L001_R1_001__paired__contig_1, whole genome shotgun sequence

⇒Summary: seq-len = 780085 bp; # of CRISPR array = 1; # of cas gene = 9  (type I) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 515017-526291 bp Zoom in on locus 1 x27 Gene: pfam13280:WYL Type: other Location: 515017-515904 bp Gene: pfam01881:cas6 Type: other Location: 515982-516719 bp Gene: cd09665:cas8b2 Type: Subtype-I-B Location: 516725-518602 bp Gene: cd09687:cas7 Type: Subtype-I-B Location: 518604-519518 bp Gene: cd09658:cas5 Type: Subtype-I-B Location: 519520-520221 bp Gene: COG1203:cas3 Type: Type-I Location: 520232-522553 bp Gene: pfam01930:cas4 Type: Type-I Location: 522568-523119 bp Gene: cd09722:cas1 Type: universal Location: 523122-524102 bp Gene: cd09725:cas2 Type: universal Location: 524105-524371 bp CRISPR array Location: 524555-526291 bp Num of repeats: 27 Spacers: s1-s26 CRISPR array Location: 524555-526291 bp Num of repeats: 27 Spacers: s1-s26 Sorry, your browser does not support inline SVG.

Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 524555-526291 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)