CRISPRone

CRISPRone report for GCA_016094055.1_ASM1609405v1

♦ Seq 1: VCAB01000006.1 Clostridioides difficile strain GV515 348_S7_L001_R1_001__paired__contig_6, whole genome shotgun sequence

⇒Summary: seq-len = 696662 bp; # of CRISPR array = 2; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 344290-345697 bp 2 Locus 2: 396609-396769 bp Zoom in on locus 1 x22 Zoom in on locus 2 x3 CRISPR array Location: 344290-345697 bp Num of repeats: 22 Spacers: s1-s21 CRISPR array Location: 344290-345697 bp Num of repeats: 22 Spacers: s1-s21 CRISPR array Location: 396609-396769 bp Num of repeats: 3 Spacers: s22-s23 CRISPR array Location: 396609-396769 bp Num of repeats: 3 Spacers: s22-s23 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 344290-345697 bp]: array | spacers
           [Locus range 396609-396769 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 2: VCAB01000011.1 Clostridioides difficile strain GV515 348_S7_L001_R1_001__paired__contig_11, whole genome shotgun sequence

⇒Summary: seq-len = 57429 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 17937-19152 bp Zoom in on locus 1 x19 CRISPR array Location: 17937-19152 bp Num of repeats: 19 Spacers: s1-s18 CRISPR array Location: 17937-19152 bp Num of repeats: 19 Spacers: s1-s18 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 17937-19152 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 3: VCAB01000008.1 Clostridioides difficile strain GV515 348_S7_L001_R1_001__paired__contig_8, whole genome shotgun sequence

⇒Summary: seq-len = 490995 bp; # of CRISPR array = 2; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 92042-92336 bp 2 Locus 2: 300451-300809 bp Zoom in on locus 1 x5 Zoom in on locus 2 x6 CRISPR array Location: 92042-92336 bp Num of repeats: 5 Spacers: s1-s4 CRISPR array Location: 92042-92336 bp Num of repeats: 5 Spacers: s1-s4 CRISPR array Location: 300451-300809 bp Num of repeats: 6 Spacers: s5-s9 CRISPR array Location: 300451-300809 bp Num of repeats: 6 Spacers: s5-s9 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 92042-92336 bp]: array | spacers
           [Locus range 300451-300809 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 4: VCAB01000005.1 Clostridioides difficile strain GV515 348_S7_L001_R1_001__paired__contig_5, whole genome shotgun sequence

⇒Summary: seq-len = 493984 bp; # of CRISPR array = 2; # of cas gene = 6  (type I, III) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 244712-245270 bp 2 Locus 2: 318537-326402 bp 3 Locus 3: 488101-489116 bp Zoom in on locus 1 x9 Zoom in on locus 2 Zoom in on locus 3 x16 CRISPR array Location: 244712-245270 bp Num of repeats: 9 Spacers: s1-s8 CRISPR array Location: 244712-245270 bp Num of repeats: 9 Spacers: s1-s8 Gene: mkCas0101:csm2gr11 Type: Subtype-III-D Location: 318537-319646 bp Gene: pfam01881:cas6 Type: other Location: 319904-320641 bp Gene: pfam09706:cas8b2 Type: Subtype-I-B Location: 320646-322121 bp Gene: cd09687:cas7 Type: Subtype-I-B Location: 322141-323154 bp Gene: cd09693:cas5 Type: Type-I Location: 323170-323967 bp Gene: cd09641:cas3HD Type: Type-I Location: 323994-326402 bp CRISPR array Location: 488101-489116 bp Num of repeats: 16 Spacers: s9-s23 CRISPR array Location: 488101-489116 bp Num of repeats: 16 Spacers: s9-s23 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 244712-245270 bp]: array | spacers
           [Locus range 488101-489116 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 5: VCAB01000009.1 Clostridioides difficile strain GV515 348_S7_L001_R1_001__paired__contig_9, whole genome shotgun sequence

⇒Summary: seq-len = 131840 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 112654-113743 bp Zoom in on locus 1 x17 CRISPR array Location: 112654-113743 bp Num of repeats: 17 Spacers: s1-s16 CRISPR array Location: 112654-113743 bp Num of repeats: 17 Spacers: s1-s16 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 112654-113743 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 6: VCAB01000007.1 Clostridioides difficile strain GV515 348_S7_L001_R1_001__paired__contig_7, whole genome shotgun sequence

⇒Summary: seq-len = 605352 bp; # of CRISPR array = 1; # of cas gene = 9  (type I) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 515284-526493 bp Zoom in on locus 1 x26 Gene: pfam13280:WYL Type: other Location: 515284-516171 bp Gene: pfam01881:cas6 Type: other Location: 516249-516986 bp Gene: cd09665:cas8b2 Type: Subtype-I-B Location: 516992-518869 bp Gene: cd09687:cas7 Type: Subtype-I-B Location: 518871-519785 bp Gene: cd09658:cas5 Type: Subtype-I-B Location: 519787-520488 bp Gene: COG1203:cas3 Type: Type-I Location: 520499-522820 bp Gene: pfam01930:cas4 Type: Type-I Location: 522835-523386 bp Gene: cd09722:cas1 Type: universal Location: 523389-524369 bp Gene: cd09725:cas2 Type: universal Location: 524372-524638 bp CRISPR array Location: 524822-526493 bp Num of repeats: 26 Spacers: s1-s25 CRISPR array Location: 524822-526493 bp Num of repeats: 26 Spacers: s1-s25 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 524822-526493 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)