CRISPRone

CRISPRone report for GCA_016094145.1_ASM1609414v1

♦ Seq 1: VCAG01000029.1 Clostridioides difficile strain GV425 199_AGTCAA_L002_R1_001_AGTCAA__paired__contig_7, whole genome shotgun sequence

⇒Summary: seq-len = 454275 bp; # of CRISPR array = 3; # of cas gene = 0 (Questionable CRISPR)

⇒Cas loci & CRISPR arrays: gff file

⇒CRISPR arrays :
           [Locus range 38211-39166 bp]: array | spacers
           [Locus range 357079-357238 bp]: array | spacers
           [Locus range 408151-409557 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 2: VCAG01000036.1 Clostridioides difficile strain GV425 199_AGTCAA_L002_R1_001_AGTCAA__paired__contig_2, whole genome shotgun sequence

⇒Summary: seq-len = 367543 bp; # of CRISPR array = 1; # of cas gene = 9  (type I) 

⇒Cas loci & CRISPR arrays: gff file

⇒Predicted cas genes: protein | gene

⇒CRISPR arrays :
           [Locus range 77399-79134 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 3: VCAG01000032.1 Clostridioides difficile strain GV425 199_AGTCAA_L002_R1_001_AGTCAA__paired__contig_22, whole genome shotgun sequence

⇒Summary: seq-len = 306665 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR)

⇒Cas loci & CRISPR arrays: gff file

⇒CRISPR arrays :
           [Locus range 302834-303848 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 4: VCAG01000033.1 Clostridioides difficile strain GV425 199_AGTCAA_L002_R1_001_AGTCAA__paired__contig_3, whole genome shotgun sequence

⇒Summary: seq-len = 484973 bp; # of CRISPR array = 1; # of cas gene = 6  (type I, III) 

⇒Cas loci & CRISPR arrays: gff file

⇒Predicted cas genes: protein | gene

⇒CRISPR arrays :
           [Locus range 239888-240445 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 5: VCAG01000026.1 Clostridioides difficile strain GV425 199_AGTCAA_L002_R1_001_AGTCAA__paired__contig_26, whole genome shotgun sequence

⇒Summary: seq-len = 29507 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR)

⇒Cas loci & CRISPR arrays: gff file

⇒CRISPR arrays :
           [Locus range 18321-19411 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 6: VCAG01000023.1 Clostridioides difficile strain GV425 199_AGTCAA_L002_R1_001_AGTCAA__paired__contig_6, whole genome shotgun sequence

⇒Summary: seq-len = 457993 bp; # of CRISPR array = 2; # of cas gene = 0 (Questionable CRISPR)

⇒Cas loci & CRISPR arrays: gff file

⇒CRISPR arrays :
           [Locus range 185829-186188 bp]: array | spacers
           [Locus range 394302-394597 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)