CRISPRone

CRISPRone report for GCA_016094175.1_ASM1609417v1

♦ Seq 1: VCAF01000023.1 Clostridioides difficile strain GV426 200_CTTGTA_L002_R1_001_CTTGTA__paired__contig_13, whole genome shotgun sequence

⇒Summary: seq-len = 489791 bp; # of CRISPR array = 2; # of cas gene = 0 (Questionable CRISPR)

⇒Cas loci & CRISPR arrays: gff file

⇒CRISPR arrays :
           [Locus range 190180-190539 bp]: array | spacers
           [Locus range 398676-398971 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 2: VCAF01000026.1 Clostridioides difficile strain GV426 200_CTTGTA_L002_R1_001_CTTGTA__paired__contig_20, whole genome shotgun sequence

⇒Summary: seq-len = 454471 bp; # of CRISPR array = 3; # of cas gene = 0 (Questionable CRISPR)

⇒Cas loci & CRISPR arrays: gff file

⇒CRISPR arrays :
           [Locus range 38150-39366 bp]: array | spacers
           [Locus range 357273-357432 bp]: array | spacers
           [Locus range 408346-409752 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 3: VCAF01000024.1 Clostridioides difficile strain GV426 200_CTTGTA_L002_R1_001_CTTGTA__paired__contig_1, whole genome shotgun sequence

⇒Summary: seq-len = 131390 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR)

⇒Cas loci & CRISPR arrays: gff file

⇒CRISPR arrays :
           [Locus range 17647-18737 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 4: VCAF01000030.1 Clostridioides difficile strain GV426 200_CTTGTA_L002_R1_001_CTTGTA__paired__contig_9, whole genome shotgun sequence

⇒Summary: seq-len = 484998 bp; # of CRISPR array = 1; # of cas gene = 6  (type I, III) 

⇒Cas loci & CRISPR arrays: gff file

⇒Predicted cas genes: protein | gene

⇒CRISPR arrays :
           [Locus range 239808-240365 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 5: VCAF01000029.1 Clostridioides difficile strain GV426 200_CTTGTA_L002_R1_001_CTTGTA__paired__contig_18, whole genome shotgun sequence

⇒Summary: seq-len = 306792 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR)

⇒Cas loci & CRISPR arrays: gff file

⇒CRISPR arrays :
           [Locus range 302778-303792 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 6: VCAF01000034.1 Clostridioides difficile strain GV426 200_CTTGTA_L002_R1_001_CTTGTA__paired__contig_10, whole genome shotgun sequence

⇒Summary: seq-len = 367030 bp; # of CRISPR array = 1; # of cas gene = 9  (type I) 

⇒Cas loci & CRISPR arrays: gff file

⇒Predicted cas genes: protein | gene

⇒CRISPR arrays :
           [Locus range 77400-78872 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)