CRISPRone

CRISPRone report for GCA_016094195.1_ASM1609419v1

♦ Seq 1: VCAH01000027.1 Clostridioides difficile strain GV423 197_AGTTCC_L002_R1_001_AGTTCC__paired__contig_18, whole genome shotgun sequence

⇒Summary: seq-len = 29727 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 18541-19631 bp Zoom in on locus 1 x17 CRISPR array Location: 18541-19631 bp Num of repeats: 17 Spacers: s1-s16 CRISPR array Location: 18541-19631 bp Num of repeats: 17 Spacers: s1-s16 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 18541-19631 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 2: VCAH01000034.1 Clostridioides difficile strain GV423 197_AGTTCC_L002_R1_001_AGTTCC__paired__contig_11, whole genome shotgun sequence

⇒Summary: seq-len = 300540 bp; # of CRISPR array = 1; # of cas gene = 9  (type I) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 77399-88699 bp Zoom in on locus 1 x27 CRISPR array Location: 77399-79134 bp Num of repeats: 27 Spacers: s1-s26 CRISPR array Location: 77399-79134 bp Num of repeats: 27 Spacers: s1-s26 Gene: cd09725:cas2 Type: universal Location: 79318-79584 bp Gene: cd09722:cas1 Type: universal Location: 79587-80567 bp Gene: pfam01930:cas4 Type: Type-I Location: 80570-81088 bp Gene: COG1203:cas3 Type: Type-I Location: 81136-83457 bp Gene: cd09658:cas5 Type: Subtype-I-B Location: 83468-84169 bp Gene: cd09687:cas7 Type: Subtype-I-B Location: 84171-85085 bp Gene: cd09665:cas8b2 Type: Subtype-I-B Location: 85087-86964 bp Gene: pfam01881:cas6 Type: other Location: 86970-87764 bp Gene: pfam13280:WYL Type: other Location: 87785-88699 bp Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 77399-79134 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 3: VCAH01000024.1 Clostridioides difficile strain GV423 197_AGTTCC_L002_R1_001_AGTTCC__paired__contig_4, whole genome shotgun sequence

⇒Summary: seq-len = 461859 bp; # of CRISPR array = 2; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 189703-190062 bp 2 Locus 2: 398168-398463 bp Zoom in on locus 1 x6 Zoom in on locus 2 x5 CRISPR array Location: 189703-190062 bp Num of repeats: 6 Spacers: s1-s5 CRISPR array Location: 189703-190062 bp Num of repeats: 6 Spacers: s1-s5 CRISPR array Location: 398168-398463 bp Num of repeats: 5 Spacers: s6-s9 CRISPR array Location: 398168-398463 bp Num of repeats: 5 Spacers: s6-s9 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 189703-190062 bp]: array | spacers
           [Locus range 398168-398463 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 4: VCAH01000030.1 Clostridioides difficile strain GV423 197_AGTTCC_L002_R1_001_AGTTCC__paired__contig_13, whole genome shotgun sequence

⇒Summary: seq-len = 762307 bp; # of CRISPR array = 4; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 38149-39365 bp 2 Locus 2: 357207-357366 bp 3 Locus 3: 408279-409685 bp 4 Locus 4: 758476-759490 bp Zoom in on locus 1 x19 Zoom in on locus 2 x3 Zoom in on locus 3 x22 Zoom in on locus 4 x16 CRISPR array Location: 38149-39365 bp Num of repeats: 19 Spacers: s1-s18 CRISPR array Location: 38149-39365 bp Num of repeats: 19 Spacers: s1-s18 CRISPR array Location: 357207-357366 bp Num of repeats: 3 Spacers: s19-s20 CRISPR array Location: 357207-357366 bp Num of repeats: 3 Spacers: s19-s20 CRISPR array Location: 408279-409685 bp Num of repeats: 22 Spacers: s21-s41 CRISPR array Location: 408279-409685 bp Num of repeats: 22 Spacers: s21-s41 CRISPR array Location: 758476-759490 bp Num of repeats: 16 Spacers: s42-s56 CRISPR array Location: 758476-759490 bp Num of repeats: 16 Spacers: s42-s56 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 38149-39365 bp]: array | spacers
           [Locus range 357207-357366 bp]: array | spacers
           [Locus range 408279-409685 bp]: array | spacers
           [Locus range 758476-759490 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 5: VCAH01000031.1 Clostridioides difficile strain GV423 197_AGTTCC_L002_R1_001_AGTTCC__paired__contig_1, whole genome shotgun sequence

⇒Summary: seq-len = 484993 bp; # of CRISPR array = 1; # of cas gene = 6  (type I, III) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 158755-166620 bp 2 Locus 2: 239888-240445 bp Zoom in on locus 1 Zoom in on locus 2 x9 Gene: cd09641:cas3HD Type: Type-I Location: 158755-161163 bp Gene: cd09693:cas5 Type: Type-I Location: 161190-161987 bp Gene: cd09687:cas7 Type: Subtype-I-B Location: 162003-163016 bp Gene: pfam09706:cas8b2 Type: Subtype-I-B Location: 163036-164511 bp Gene: pfam01881:cas6 Type: other Location: 164516-165253 bp Gene: mkCas0101:csm2gr11 Type: Subtype-III-D Location: 165511-166620 bp CRISPR array Location: 239888-240445 bp Num of repeats: 9 Spacers: s1-s8 CRISPR array Location: 239888-240445 bp Num of repeats: 9 Spacers: s1-s8 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 239888-240445 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)