CRISPRone

CRISPRone report for GCA_016094205.1_ASM1609420v1

♦ Seq 1: VCAJ01000032.1 Clostridioides difficile strain GV415 188_CCGTCC_L002_R1_001_CCGTCC__paired__contig_16, whole genome shotgun sequence

⇒Summary: seq-len = 367329 bp; # of CRISPR array = 1; # of cas gene = 9  (type I) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 77399-88699 bp Zoom in on locus 1 x27 CRISPR array Location: 77399-79134 bp Num of repeats: 27 Spacers: s1-s26 CRISPR array Location: 77399-79134 bp Num of repeats: 27 Spacers: s1-s26 Gene: cd09725:cas2 Type: universal Location: 79318-79584 bp Gene: cd09722:cas1 Type: universal Location: 79587-80567 bp Gene: pfam01930:cas4 Type: Type-I Location: 80570-81088 bp Gene: COG1203:cas3 Type: Type-I Location: 81136-83457 bp Gene: cd09658:cas5 Type: Subtype-I-B Location: 83468-84169 bp Gene: cd09687:cas7 Type: Subtype-I-B Location: 84171-85085 bp Gene: cd09665:cas8b2 Type: Subtype-I-B Location: 85087-86964 bp Gene: pfam01881:cas6 Type: other Location: 86970-87764 bp Gene: pfam13280:WYL Type: other Location: 87785-88699 bp Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 77399-79134 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 2: VCAJ01000023.1 Clostridioides difficile strain GV415 188_CCGTCC_L002_R1_001_CCGTCC__paired__contig_24, whole genome shotgun sequence

⇒Summary: seq-len = 28832 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 17646-18736 bp Zoom in on locus 1 x17 CRISPR array Location: 17646-18736 bp Num of repeats: 17 Spacers: s1-s16 CRISPR array Location: 17646-18736 bp Num of repeats: 17 Spacers: s1-s16 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 17646-18736 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 3: VCAJ01000028.1 Clostridioides difficile strain GV415 188_CCGTCC_L002_R1_001_CCGTCC__paired__contig_5, whole genome shotgun sequence

⇒Summary: seq-len = 306575 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 302809-303758 bp Zoom in on locus 1 x15 CRISPR array Location: 302809-303758 bp Num of repeats: 15 Spacers: s1-s14 CRISPR array Location: 302809-303758 bp Num of repeats: 15 Spacers: s1-s14 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 302809-303758 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 4: VCAJ01000020.1 Clostridioides difficile strain GV415 188_CCGTCC_L002_R1_001_CCGTCC__paired__contig_10, whole genome shotgun sequence

⇒Summary: seq-len = 458170 bp; # of CRISPR array = 2; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 185750-186109 bp 2 Locus 2: 394215-394774 bp Zoom in on locus 1 x6 Zoom in on locus 2 x9 CRISPR array Location: 185750-186109 bp Num of repeats: 6 Spacers: s1-s5 CRISPR array Location: 185750-186109 bp Num of repeats: 6 Spacers: s1-s5 CRISPR array Location: 394215-394774 bp Num of repeats: 9 Spacers: s6-s13 CRISPR array Location: 394215-394774 bp Num of repeats: 9 Spacers: s6-s13 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 185750-186109 bp]: array | spacers
           [Locus range 394215-394774 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 5: VCAJ01000025.1 Clostridioides difficile strain GV415 188_CCGTCC_L002_R1_001_CCGTCC__paired__contig_2, whole genome shotgun sequence

⇒Summary: seq-len = 453477 bp; # of CRISPR array = 3; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 38149-39036 bp 2 Locus 2: 356939-357098 bp 3 Locus 3: 408011-408759 bp Zoom in on locus 1 x14 Zoom in on locus 2 x3 Zoom in on locus 3 x12 CRISPR array Location: 38149-39036 bp Num of repeats: 14 Spacers: s1-s13 CRISPR array Location: 38149-39036 bp Num of repeats: 14 Spacers: s1-s13 CRISPR array Location: 356939-357098 bp Num of repeats: 3 Spacers: s14-s15 CRISPR array Location: 356939-357098 bp Num of repeats: 3 Spacers: s14-s15 CRISPR array Location: 408011-408759 bp Num of repeats: 12 Spacers: s16-s26 CRISPR array Location: 408011-408759 bp Num of repeats: 12 Spacers: s16-s26 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 38149-39036 bp]: array | spacers
           [Locus range 356939-357098 bp]: array | spacers
           [Locus range 408011-408759 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 6: VCAJ01000029.1 Clostridioides difficile strain GV415 188_CCGTCC_L002_R1_001_CCGTCC__paired__contig_6, whole genome shotgun sequence

⇒Summary: seq-len = 484954 bp; # of CRISPR array = 1; # of cas gene = 6  (type I, III) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 158755-166620 bp 2 Locus 2: 239888-240378 bp Zoom in on locus 1 Zoom in on locus 2 x8 Gene: cd09641:cas3HD Type: Type-I Location: 158755-161163 bp Gene: cd09693:cas5 Type: Type-I Location: 161190-161987 bp Gene: cd09687:cas7 Type: Subtype-I-B Location: 162003-163016 bp Gene: pfam09706:cas8b2 Type: Subtype-I-B Location: 163036-164511 bp Gene: pfam01881:cas6 Type: other Location: 164516-165253 bp Gene: mkCas0101:csm2gr11 Type: Subtype-III-D Location: 165511-166620 bp CRISPR array Location: 239888-240378 bp Num of repeats: 8 Spacers: s1-s7 CRISPR array Location: 239888-240378 bp Num of repeats: 8 Spacers: s1-s7 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 239888-240378 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)