CRISPRone

CRISPRone report for GCA_016094215.1_ASM1609421v1

♦ Seq 1: VCAI01000030.1 Clostridioides difficile strain GV421 195_ATGTCA_L002_R1_001_ATGTCA__paired__contig_22, whole genome shotgun sequence

⇒Summary: seq-len = 454154 bp; # of CRISPR array = 3; # of cas gene = 0 (Questionable CRISPR)

⇒Cas loci & CRISPR arrays: gff file

⇒CRISPR arrays :
           [Locus range 38150-39169 bp]: array | spacers
           [Locus range 357025-357184 bp]: array | spacers
           [Locus range 408097-409435 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 2: VCAI01000027.1 Clostridioides difficile strain GV421 195_ATGTCA_L002_R1_001_ATGTCA__paired__contig_23, whole genome shotgun sequence

⇒Summary: seq-len = 28834 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR)

⇒Cas loci & CRISPR arrays: gff file

⇒CRISPR arrays :
           [Locus range 17647-18737 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 3: VCAI01000034.1 Clostridioides difficile strain GV421 195_ATGTCA_L002_R1_001_ATGTCA__paired__contig_40, whole genome shotgun sequence

⇒Summary: seq-len = 8439 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR)

⇒Cas loci & CRISPR arrays: gff file

⇒CRISPR arrays :
           [Locus range 4607-5621 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 4: VCAI01000039.1 Clostridioides difficile strain GV421 195_ATGTCA_L002_R1_001_ATGTCA__paired__contig_17, whole genome shotgun sequence

⇒Summary: seq-len = 367412 bp; # of CRISPR array = 1; # of cas gene = 9  (type I) 

⇒Cas loci & CRISPR arrays: gff file

⇒Predicted cas genes: protein | gene

⇒CRISPR arrays :
           [Locus range 77400-78872 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 5: VCAI01000024.1 Clostridioides difficile strain GV421 195_ATGTCA_L002_R1_001_ATGTCA__paired__contig_14, whole genome shotgun sequence

⇒Summary: seq-len = 457912 bp; # of CRISPR array = 2; # of cas gene = 0 (Questionable CRISPR)

⇒Cas loci & CRISPR arrays: gff file

⇒CRISPR arrays :
           [Locus range 185747-186106 bp]: array | spacers
           [Locus range 394220-394515 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 6: VCAI01000035.1 Clostridioides difficile strain GV421 195_ATGTCA_L002_R1_001_ATGTCA__paired__contig_11, whole genome shotgun sequence

⇒Summary: seq-len = 484596 bp; # of CRISPR array = 1; # of cas gene = 6  (type I, III) 

⇒Cas loci & CRISPR arrays: gff file

⇒Predicted cas genes: protein | gene

⇒CRISPR arrays :
           [Locus range 239421-239978 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)