CRISPRone

CRISPRone report for GCA_016094245.1_ASM1609424v1

♦ Seq 1: VCAK01000039.1 Clostridioides difficile strain GV377 149_GTGAAA_L002_R1_001_GTGAAA__paired__contig_8, whole genome shotgun sequence

⇒Summary: seq-len = 484947 bp; # of CRISPR array = 1; # of cas gene = 6  (type I, III) 

⇒Cas loci & CRISPR arrays: gff file

⇒Predicted cas genes: protein | gene

⇒CRISPR arrays :
           [Locus range 239800-240357 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 2: VCAK01000032.1 Clostridioides difficile strain GV377 149_GTGAAA_L002_R1_001_GTGAAA__paired__contig_6, whole genome shotgun sequence

⇒Summary: seq-len = 454408 bp; # of CRISPR array = 3; # of cas gene = 0 (Questionable CRISPR)

⇒Cas loci & CRISPR arrays: gff file

⇒CRISPR arrays :
           [Locus range 38150-39366 bp]: array | spacers
           [Locus range 357211-357370 bp]: array | spacers
           [Locus range 408283-409689 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 3: VCAK01000029.1 Clostridioides difficile strain GV377 149_GTGAAA_L002_R1_001_GTGAAA__paired__contig_39, whole genome shotgun sequence

⇒Summary: seq-len = 28776 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR)

⇒Cas loci & CRISPR arrays: gff file

⇒CRISPR arrays :
           [Locus range 17721-18679 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 4: VCAK01000026.1 Clostridioides difficile strain GV377 149_GTGAAA_L002_R1_001_GTGAAA__paired__contig_5, whole genome shotgun sequence

⇒Summary: seq-len = 462227 bp; # of CRISPR array = 2; # of cas gene = 0 (Questionable CRISPR)

⇒Cas loci & CRISPR arrays: gff file

⇒CRISPR arrays :
           [Locus range 190062-190421 bp]: array | spacers
           [Locus range 398535-398830 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 5: VCAK01000044.1 Clostridioides difficile strain GV377 149_GTGAAA_L002_R1_001_GTGAAA__paired__contig_1, whole genome shotgun sequence

⇒Summary: seq-len = 297855 bp; # of CRISPR array = 1; # of cas gene = 9  (type I) 

⇒Cas loci & CRISPR arrays: gff file

⇒Predicted cas genes: protein | gene

⇒CRISPR arrays :
           [Locus range 77400-79070 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 6: VCAK01000038.1 Clostridioides difficile strain GV377 149_GTGAAA_L002_R1_001_GTGAAA__paired__contig_28, whole genome shotgun sequence

⇒Summary: seq-len = 75718 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR)

⇒Cas loci & CRISPR arrays: gff file

⇒CRISPR arrays :
           [Locus range 71886-72900 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)