CRISPRone

CRISPRone report for GCA_016094275.1_ASM1609427v1

♦ Seq 1: VCAL01000032.1 Clostridioides difficile strain GV375 147_GTGGCC_L002_R1_001_GTGGCC__paired__contig_3, whole genome shotgun sequence

⇒Summary: seq-len = 367273 bp; # of CRISPR array = 1; # of cas gene = 9  (type I) 

⇒Cas loci & CRISPR arrays: gff file

⇒Predicted cas genes: protein | gene

⇒CRISPR arrays :
           [Locus range 77476-79211 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 2: VCAL01000022.1 Clostridioides difficile strain GV375 147_GTGGCC_L002_R1_001_GTGGCC__paired__contig_9, whole genome shotgun sequence

⇒Summary: seq-len = 462178 bp; # of CRISPR array = 2; # of cas gene = 0 (Questionable CRISPR)

⇒Cas loci & CRISPR arrays: gff file

⇒CRISPR arrays :
           [Locus range 162311-162670 bp]: array | spacers
           [Locus range 370800-371359 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 3: VCAL01000024.1 Clostridioides difficile strain GV375 147_GTGGCC_L002_R1_001_GTGGCC__paired__contig_4, whole genome shotgun sequence

⇒Summary: seq-len = 454390 bp; # of CRISPR array = 3; # of cas gene = 0 (Questionable CRISPR)

⇒Cas loci & CRISPR arrays: gff file

⇒CRISPR arrays :
           [Locus range 38150-39300 bp]: array | spacers
           [Locus range 357193-357352 bp]: array | spacers
           [Locus range 408265-409671 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 4: VCAL01000027.1 Clostridioides difficile strain GV375 147_GTGGCC_L002_R1_001_GTGGCC__paired__contig_17, whole genome shotgun sequence

⇒Summary: seq-len = 306568 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR)

⇒Cas loci & CRISPR arrays: gff file

⇒CRISPR arrays :
           [Locus range 302801-303750 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 5: VCAL01000023.1 Clostridioides difficile strain GV375 147_GTGGCC_L002_R1_001_GTGGCC__paired__contig_25, whole genome shotgun sequence

⇒Summary: seq-len = 154189 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR)

⇒Cas loci & CRISPR arrays: gff file

⇒CRISPR arrays :
           [Locus range 17647-18737 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 6: VCAL01000028.1 Clostridioides difficile strain GV375 147_GTGGCC_L002_R1_001_GTGGCC__paired__contig_2, whole genome shotgun sequence

⇒Summary: seq-len = 485043 bp; # of CRISPR array = 1; # of cas gene = 6  (type I, III) 

⇒Cas loci & CRISPR arrays: gff file

⇒Predicted cas genes: protein | gene

⇒CRISPR arrays :
           [Locus range 239838-240395 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)