CRISPRone

CRISPRone report for GCA_016595165.1_ASM1659516v1

♦ Seq 1: JAENHR010000001.1 Pseudomonas aeruginosa strain SPA03 Pseudomonas_aeruginosa_SPA03_contig_1, whole genome shotgun sequence

⇒Summary: seq-len = 5225585 bp; # of CRISPR array = 3; # of cas gene = 10  (type I, IV) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 301350-311211 bp 2 Locus 2: 3730093-3740402 bp 3 Locus 3: 5096306-5096753 bp Zoom in on locus 1 Zoom in on locus 2 x13 x17 Zoom in on locus 3 x8 Gene: mkCas0115:csx3 Type: other Location: 301350-302960 bp Gene: pfam13280:WYL Type: other Location: 303121-304137 bp Gene: unk Type: unknown Location: 305409-305588 bp Gene: unk Type: unknown Location: 305898-306431 bp Gene: pfam13280:WYL Type: other Location: 306446-307321 bp Gene: unk Type: unknown Location: 307452-307739 bp Gene: unk Type: unknown Location: 307874-308452 bp Gene: COG1199:DinG Type: Subtype-IV-A Location: 308845-311211 bp CRISPR array Location: 3730093-3730841 bp Num of repeats: 13 Spacers: s1-s12 CRISPR array Location: 3730093-3730841 bp Num of repeats: 13 Spacers: s1-s12 Gene: cd09718:cas1 Type: universal Location: 3731092-3732066 bp Gene: COG1203:cas3 Type: Type-I Location: 3732063-3735293 bp Gene: pfam09611:cas8f Type: Subtype-I-F Location: 3735351-3736655 bp Gene: cd09736:cas5f Type: Subtype-I-F Location: 3736642-3737625 bp Gene: pfam09615:cas7f Type: Subtype-I-F Location: 3737636-3738664 bp Gene: cd09739:cas6f Type: other Location: 3738668-3739231 bp CRISPR array Location: 3739415-3740402 bp Num of repeats: 17 Spacers: s13-s28 CRISPR array Location: 3739415-3740402 bp Num of repeats: 17 Spacers: s13-s28 CRISPR array Location: 5096306-5096753 bp Num of repeats: 8 Spacers: s29-s35 CRISPR array Location: 5096306-5096753 bp Num of repeats: 8 Spacers: s29-s35 Sorry, your browser does not support inline SVG.

Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 3730093-3730841 bp]: array | spacers
           [Locus range 3739415-3740402 bp]: array | spacers
           [Locus range 5096306-5096753 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)