CRISPRone

CRISPRone report for GCA_900002435.1_CD105HS9

♦ Seq 1: CCRO01000001.1 Peptoclostridium difficile genome assembly, contig: clo2.gff, whole genome shotgun sequence

⇒Summary: seq-len = 4150738 bp; # of CRISPR array = 17; # of cas gene = 6  (type I, III) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 0-496 bp 2 Locus 2: 285256-285893 bp 3 Locus 3: 387841-389633 bp 4 Locus 4: 1646356-1654221 bp 5 Locus 5: 2157425-2158031 bp 6 Locus 6: 3005340-3005767 bp 7 Locus 7: 3441767-3443383 bp 8 Locus 8: 3957238-3957528 bp 9 Locus 9: 4051227-4051320 bp 10 Locus 10: 4133180-4133410 bp Zoom in on locus 1 x8 Zoom in on locus 2 x10 Zoom in on locus 3 x2 x4 x2 x2 x5 Zoom in on locus 4 Zoom in on locus 5 x2 x2 Zoom in on locus 6 x7 Zoom in on locus 7 x2 x7 x6 x5 Zoom in on locus 8 x5 Zoom in on locus 9 x2 Zoom in on locus 10 x4 CRISPR array Location: 0-496 bp Num of repeats: 8 Spacers: s1-s7 CRISPR array Location: 0-496 bp Num of repeats: 8 Spacers: s1-s7 CRISPR array Location: 285256-285893 bp Num of repeats: 10 Spacers: s8-s16 CRISPR array Location: 285256-285893 bp Num of repeats: 10 Spacers: s8-s16 CRISPR array Location: 387841-387935 bp Num of repeats: 2 Spacers: s17-s17 CRISPR array Location: 387841-387935 bp Num of repeats: 2 Spacers: s17-s17 CRISPR array Location: 388043-388269 bp Num of repeats: 4 Spacers: s18-s20 CRISPR array Location: 388043-388269 bp Num of repeats: 4 Spacers: s18-s20 CRISPR array Location: 388377-388470 bp Num of repeats: 2 Spacers: s21-s21 CRISPR array Location: 388377-388470 bp Num of repeats: 2 Spacers: s21-s21 CRISPR array Location: 388575-388669 bp Num of repeats: 2 Spacers: s22-s22 CRISPR array Location: 388575-388669 bp Num of repeats: 2 Spacers: s22-s22 CRISPR array Location: 389344-389633 bp Num of repeats: 5 Spacers: s23-s26 CRISPR array Location: 389344-389633 bp Num of repeats: 5 Spacers: s23-s26 Gene: cd09641:cas3HD Type: Type-I Location: 1646356-1648764 bp Gene: cd09693:cas5 Type: Type-I Location: 1648791-1649588 bp Gene: cd09687:cas7 Type: Subtype-I-B Location: 1649604-1650617 bp Gene: pfam09706:cas8b2 Type: Subtype-I-B Location: 1650637-1652112 bp Gene: pfam01881:cas6 Type: other Location: 1652117-1652854 bp Gene: mkCas0101:csm2gr11 Type: Subtype-III-D Location: 1653112-1654221 bp CRISPR array Location: 2157425-2157519 bp Num of repeats: 2 Spacers: s27-s27 CRISPR array Location: 2157425-2157519 bp Num of repeats: 2 Spacers: s27-s27 CRISPR array Location: 2157938-2158031 bp Num of repeats: 2 Spacers: s28-s28 CRISPR array Location: 2157938-2158031 bp Num of repeats: 2 Spacers: s28-s28 CRISPR array Location: 3005340-3005767 bp Num of repeats: 7 Spacers: s29-s34 CRISPR array Location: 3005340-3005767 bp Num of repeats: 7 Spacers: s29-s34 CRISPR array Location: 3441767-3441860 bp Num of repeats: 2 Spacers: s35-s35 CRISPR array Location: 3441767-3441860 bp Num of repeats: 2 Spacers: s35-s35 CRISPR array Location: 3441966-3442389 bp Num of repeats: 7 Spacers: s36-s41 CRISPR array Location: 3441966-3442389 bp Num of repeats: 7 Spacers: s36-s41 CRISPR array Location: 3442626-3442982 bp Num of repeats: 6 Spacers: s42-s46 CRISPR array Location: 3442626-3442982 bp Num of repeats: 6 Spacers: s42-s46 CRISPR array Location: 3443089-3443383 bp Num of repeats: 5 Spacers: s47-s50 CRISPR array Location: 3443089-3443383 bp Num of repeats: 5 Spacers: s47-s50 CRISPR array Location: 3957238-3957528 bp Num of repeats: 5 Spacers: s51-s54 CRISPR array Location: 3957238-3957528 bp Num of repeats: 5 Spacers: s51-s54 CRISPR array Location: 4051227-4051320 bp Num of repeats: 2 Spacers: s55-s55 CRISPR array Location: 4051227-4051320 bp Num of repeats: 2 Spacers: s55-s55 CRISPR array Location: 4133180-4133410 bp Num of repeats: 4 Spacers: s56-s58 CRISPR array Location: 4133180-4133410 bp Num of repeats: 4 Spacers: s56-s58 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 0-496 bp]: array | spacers
           [Locus range 285256-285893 bp]: array | spacers
           [Locus range 387841-387935 bp]: array | spacers
           [Locus range 388043-388269 bp]: array | spacers
           [Locus range 388377-388470 bp]: array | spacers
           [Locus range 388575-388669 bp]: array | spacers
           [Locus range 389344-389633 bp]: array | spacers
           [Locus range 2157425-2157519 bp]: array | spacers
           [Locus range 2157938-2158031 bp]: array | spacers
           [Locus range 3005340-3005767 bp]: array | spacers
           [Locus range 3441767-3441860 bp]: array | spacers
           [Locus range 3441966-3442389 bp]: array | spacers
           [Locus range 3442626-3442982 bp]: array | spacers
           [Locus range 3443089-3443383 bp]: array | spacers
           [Locus range 3957238-3957528 bp]: array | spacers
           [Locus range 4051227-4051320 bp]: array | spacers
           [Locus range 4133180-4133410 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)