CRISPRone

CRISPRone report for GCA_900002475.1_CD105HS22

♦ Seq 1: CCRY01000099.1 Peptoclostridium difficile genome assembly, contig: NODE_63_length_81508_cov_12.660696, whole genome shotgun sequence

⇒Summary: seq-len = 81534 bp; # of CRISPR array = 2; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 78245-78739 bp Zoom in on locus 1 x2 x3 CRISPR array Location: 78245-78338 bp Num of repeats: 2 Spacers: s1-s1 CRISPR array Location: 78245-78338 bp Num of repeats: 2 Spacers: s1-s1 CRISPR array Location: 78578-78739 bp Num of repeats: 3 Spacers: s2-s3 CRISPR array Location: 78578-78739 bp Num of repeats: 3 Spacers: s2-s3 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 78245-78338 bp]: array | spacers
           [Locus range 78578-78739 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 2: CCRY01000060.1 Peptoclostridium difficile genome assembly, contig: NODE_343_length_201523_cov_12.751637, whole genome shotgun sequence

⇒Summary: seq-len = 201549 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 110074-110168 bp Zoom in on locus 1 x2 CRISPR array Location: 110074-110168 bp Num of repeats: 2 Spacers: s1-s1 CRISPR array Location: 110074-110168 bp Num of repeats: 2 Spacers: s1-s1 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 110074-110168 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 3: CCRY01000052.1 Peptoclostridium difficile genome assembly, contig: NODE_292_length_13656_cov_12.013035, whole genome shotgun sequence

⇒Summary: seq-len = 13682 bp; # of CRISPR array = 5; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 5645-10346 bp Zoom in on locus 1 x3 x4 x2 x4 x3 CRISPR array Location: 5645-5805 bp Num of repeats: 3 Spacers: s1-s2 CRISPR array Location: 5645-5805 bp Num of repeats: 3 Spacers: s1-s2 CRISPR array Location: 7542-7766 bp Num of repeats: 4 Spacers: s3-s5 CRISPR array Location: 7542-7766 bp Num of repeats: 4 Spacers: s3-s5 CRISPR array Location: 9453-9548 bp Num of repeats: 2 Spacers: s6-s6 CRISPR array Location: 9453-9548 bp Num of repeats: 2 Spacers: s6-s6 CRISPR array Location: 9852-10077 bp Num of repeats: 4 Spacers: s7-s9 CRISPR array Location: 9852-10077 bp Num of repeats: 4 Spacers: s7-s9 CRISPR array Location: 10180-10346 bp Num of repeats: 3 Spacers: s10-s11 CRISPR array Location: 10180-10346 bp Num of repeats: 3 Spacers: s10-s11 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 5645-5805 bp]: array | spacers
           [Locus range 7542-7766 bp]: array | spacers
           [Locus range 9453-9548 bp]: array | spacers
           [Locus range 9852-10077 bp]: array | spacers
           [Locus range 10180-10346 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 4: CCRY01000005.1 Peptoclostridium difficile genome assembly, contig: NODE_1066_length_329_cov_9.306991, whole genome shotgun sequence

⇒Summary: seq-len = 355 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 63-223 bp Zoom in on locus 1 x3 CRISPR array Location: 63-223 bp Num of repeats: 3 Spacers: s1-s2 CRISPR array Location: 63-223 bp Num of repeats: 3 Spacers: s1-s2 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 63-223 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 5: CCRY01000009.1 Peptoclostridium difficile genome assembly, contig: NODE_1094_length_68090_cov_12.624996, whole genome shotgun sequence

⇒Summary: seq-len = 68116 bp; # of CRISPR array = 2; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 3587-4406 bp Zoom in on locus 1 x5 x5 CRISPR array Location: 3587-3878 bp Num of repeats: 5 Spacers: s1-s4 CRISPR array Location: 3587-3878 bp Num of repeats: 5 Spacers: s1-s4 CRISPR array Location: 4114-4406 bp Num of repeats: 5 Spacers: s5-s8 CRISPR array Location: 4114-4406 bp Num of repeats: 5 Spacers: s5-s8 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 3587-3878 bp]: array | spacers
           [Locus range 4114-4406 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 6: CCRY01000025.1 Peptoclostridium difficile genome assembly, contig: NODE_1310_length_187745_cov_12.946188, whole genome shotgun sequence

⇒Summary: seq-len = 187771 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 123958-124524 bp Zoom in on locus 1 x9 CRISPR array Location: 123958-124524 bp Num of repeats: 9 Spacers: s1-s8 CRISPR array Location: 123958-124524 bp Num of repeats: 9 Spacers: s1-s8 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 123958-124524 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 7: CCRY01000078.1 Peptoclostridium difficile genome assembly, contig: NODE_454_length_28537_cov_12.639276, whole genome shotgun sequence

⇒Summary: seq-len = 28563 bp; # of CRISPR array = 2; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 17842-18405 bp Zoom in on locus 1 x2 x6 CRISPR array Location: 17842-17938 bp Num of repeats: 2 Spacers: s1-s1 CRISPR array Location: 17842-17938 bp Num of repeats: 2 Spacers: s1-s1 CRISPR array Location: 18047-18405 bp Num of repeats: 6 Spacers: s2-s6 CRISPR array Location: 18047-18405 bp Num of repeats: 6 Spacers: s2-s6 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 17842-17938 bp]: array | spacers
           [Locus range 18047-18405 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 8: CCRY01000077.1 Peptoclostridium difficile genome assembly, contig: NODE_449_length_285379_cov_12.828067, whole genome shotgun sequence

⇒Summary: seq-len = 285405 bp; # of CRISPR array = 1; # of cas gene = 6  (type I, III) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 159934-168255 bp 2 Locus 2: 241469-241695 bp Zoom in on locus 1 Zoom in on locus 2 x4 Gene: cd09641:cas3HD Type: Type-I Location: 159934-162342 bp Gene: cd09693:cas5 Type: Type-I Location: 162369-163166 bp Gene: cd09687:cas7 Type: Subtype-I-B Location: 163182-164198 bp Gene: pfam09706:cas8b2 Type: Subtype-I-B Location: 164218-165693 bp Gene: pfam01881:cas6 Type: other Location: 165698-166435 bp Gene: unk Type: unknown Location: 166536-166712 bp Gene: mkCas0101:csm2gr11 Type: Subtype-III-D Location: 167146-168255 bp CRISPR array Location: 241469-241695 bp Num of repeats: 4 Spacers: s1-s3 CRISPR array Location: 241469-241695 bp Num of repeats: 4 Spacers: s1-s3 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 241469-241695 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 9: CCRY01000020.1 Peptoclostridium difficile genome assembly, contig: NODE_1259_length_523496_cov_13.565129, whole genome shotgun sequence

⇒Summary: seq-len = 523522 bp; # of CRISPR array = 4; # of cas gene = 9  (type I) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 252437-263238 bp 2 Locus 2: 484866-484959 bp Zoom in on locus 1 x7 x4 x2 Zoom in on locus 2 x2 CRISPR array Location: 252437-252861 bp Num of repeats: 7 Spacers: s1-s6 CRISPR array Location: 252437-252861 bp Num of repeats: 7 Spacers: s1-s6 CRISPR array Location: 253094-253319 bp Num of repeats: 4 Spacers: s7-s9 CRISPR array Location: 253094-253319 bp Num of repeats: 4 Spacers: s7-s9 CRISPR array Location: 253607-253700 bp Num of repeats: 2 Spacers: s10-s10 CRISPR array Location: 253607-253700 bp Num of repeats: 2 Spacers: s10-s10 Gene: cd09725:cas2 Type: universal Location: 253884-254150 bp Gene: cd09722:cas1 Type: universal Location: 254153-255133 bp Gene: pfam01930:cas4 Type: Type-I Location: 255136-255654 bp Gene: COG1203:cas3 Type: Type-I Location: 255702-258023 bp Gene: cd09658:cas5 Type: Subtype-I-B Location: 258034-258735 bp Gene: cd09687:cas7 Type: Subtype-I-B Location: 258737-259651 bp Gene: cd09665:cas8b2 Type: Subtype-I-B Location: 259653-261503 bp Gene: pfam01881:cas6 Type: other Location: 261509-262303 bp Gene: pfam13280:WYL Type: other Location: 262324-263238 bp CRISPR array Location: 484866-484959 bp Num of repeats: 2 Spacers: s11-s11 CRISPR array Location: 484866-484959 bp Num of repeats: 2 Spacers: s11-s11 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 252437-252861 bp]: array | spacers
           [Locus range 253094-253319 bp]: array | spacers
           [Locus range 253607-253700 bp]: array | spacers
           [Locus range 484866-484959 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)