CRISPRone

CRISPRone report for GCA_900002525.1_CD105HS12

♦ Seq 1: CCRV01000150.1 Peptoclostridium difficile genome assembly, contig: NODE_883_length_28219_cov_13.232220, whole genome shotgun sequence

⇒Summary: seq-len = 28243 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 17717-18144 bp Zoom in on locus 1 x7 CRISPR array Location: 17717-18144 bp Num of repeats: 7 Spacers: s1-s6 CRISPR array Location: 17717-18144 bp Num of repeats: 7 Spacers: s1-s6 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 17717-18144 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 2: CCRV01000145.1 Peptoclostridium difficile genome assembly, contig: NODE_819_length_340993_cov_13.731223, whole genome shotgun sequence

⇒Summary: seq-len = 341017 bp; # of CRISPR array = 1; # of cas gene = 9  (type I) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 166684-176728 bp Zoom in on locus 1 x3 CRISPR array Location: 166684-166840 bp Num of repeats: 3 Spacers: s1-s2 CRISPR array Location: 166684-166840 bp Num of repeats: 3 Spacers: s1-s2 Gene: cd09725:cas2 Type: universal Location: 167347-167613 bp Gene: cd09722:cas1 Type: universal Location: 167616-168596 bp Gene: pfam01930:cas4 Type: Type-I Location: 168680-169117 bp Gene: COG1203:cas3 Type: Type-I Location: 169165-171486 bp Gene: cd09658:cas5 Type: Subtype-I-B Location: 171497-172198 bp Gene: cd09687:cas7 Type: Subtype-I-B Location: 172200-173114 bp Gene: cd09665:cas8b2 Type: Subtype-I-B Location: 173116-174993 bp Gene: pfam01881:cas6 Type: other Location: 174999-175793 bp Gene: pfam13280:WYL Type: other Location: 175814-176728 bp Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 166684-166840 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 3: CCRV01000024.1 Peptoclostridium difficile genome assembly, contig: NODE_1359_length_217356_cov_13.335307, whole genome shotgun sequence

⇒Summary: seq-len = 217380 bp; # of CRISPR array = 2; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 163090-164177 bp Zoom in on locus 1 x8 x4 CRISPR array Location: 163090-163579 bp Num of repeats: 8 Spacers: s1-s7 CRISPR array Location: 163090-163579 bp Num of repeats: 8 Spacers: s1-s7 CRISPR array Location: 163949-164177 bp Num of repeats: 4 Spacers: s8-s10 CRISPR array Location: 163949-164177 bp Num of repeats: 4 Spacers: s8-s10 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 163090-163579 bp]: array | spacers
           [Locus range 163949-164177 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 4: CCRV01000068.1 Peptoclostridium difficile genome assembly, contig: NODE_296_length_98062_cov_13.396851, whole genome shotgun sequence

⇒Summary: seq-len = 98086 bp; # of CRISPR array = 2; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 94857-95322 bp Zoom in on locus 1 x4 x2 CRISPR array Location: 94857-95083 bp Num of repeats: 4 Spacers: s1-s3 CRISPR array Location: 94857-95083 bp Num of repeats: 4 Spacers: s1-s3 CRISPR array Location: 95229-95322 bp Num of repeats: 2 Spacers: s4-s4 CRISPR array Location: 95229-95322 bp Num of repeats: 2 Spacers: s4-s4 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 94857-95083 bp]: array | spacers
           [Locus range 95229-95322 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 5: CCRV01000147.1 Peptoclostridium difficile genome assembly, contig: NODE_827_length_121604_cov_13.662840, whole genome shotgun sequence

⇒Summary: seq-len = 121628 bp; # of CRISPR array = 3; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 113270-113886 bp Zoom in on locus 1 x2 x3 x3 CRISPR array Location: 113270-113364 bp Num of repeats: 2 Spacers: s1-s1 CRISPR array Location: 113270-113364 bp Num of repeats: 2 Spacers: s1-s1 CRISPR array Location: 113465-113623 bp Num of repeats: 3 Spacers: s2-s3 CRISPR array Location: 113465-113623 bp Num of repeats: 3 Spacers: s2-s3 CRISPR array Location: 113725-113886 bp Num of repeats: 3 Spacers: s4-s5 CRISPR array Location: 113725-113886 bp Num of repeats: 3 Spacers: s4-s5 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 113270-113364 bp]: array | spacers
           [Locus range 113465-113623 bp]: array | spacers
           [Locus range 113725-113886 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 6: CCRV01000125.1 Peptoclostridium difficile genome assembly, contig: NODE_633_length_142844_cov_13.529788, whole genome shotgun sequence

⇒Summary: seq-len = 142868 bp; # of CRISPR array = 0; # of cas gene = 6  (type I, III) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 65929-73794 bp Zoom in on locus 1 Gene: cd09641:cas3HD Type: Type-I Location: 65929-68337 bp Gene: cd09693:cas5 Type: Type-I Location: 68364-69161 bp Gene: cd09687:cas7 Type: Subtype-I-B Location: 69177-70190 bp Gene: pfam09706:cas8b2 Type: Subtype-I-B Location: 70210-71685 bp Gene: pfam01881:cas6 Type: other Location: 71690-72427 bp Gene: mkCas0101:csm2gr11 Type: Subtype-III-D Location: 72685-73794 bp Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 7: CCRV01000098.1 Peptoclostridium difficile genome assembly, contig: NODE_447_length_134829_cov_13.728849, whole genome shotgun sequence

⇒Summary: seq-len = 134853 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 0-225 bp Zoom in on locus 1 x4 CRISPR array Location: 0-225 bp Num of repeats: 4 Spacers: s1-s3 CRISPR array Location: 0-225 bp Num of repeats: 4 Spacers: s1-s3 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 0-225 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)