CRISPRone

CRISPRone report for GCA_900002535.1_CD105HS8

♦ Seq 1: CCRS01000028.1 Peptoclostridium difficile genome assembly, contig: NODE_213_length_236151_cov_12.192648, whole genome shotgun sequence

⇒Summary: seq-len = 236177 bp; # of CRISPR array = 0; # of cas gene = 6  (type I, III) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 45050-52925 bp Zoom in on locus 1 Gene: cd09641:cas3HD Type: Type-I Location: 45050-47458 bp Gene: cd09693:cas5 Type: Type-I Location: 47485-48291 bp Gene: cd09687:cas7 Type: Subtype-I-B Location: 48307-49320 bp Gene: pfam09706:cas8b2 Type: Subtype-I-B Location: 49340-50815 bp Gene: pfam01881:cas6 Type: other Location: 50820-51557 bp Gene: mkCas0101:csm2gr11 Type: Subtype-III-D Location: 51816-52925 bp Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 2: CCRS01000008.1 Peptoclostridium difficile genome assembly, contig: NODE_1122_length_140677_cov_12.235284, whole genome shotgun sequence

⇒Summary: seq-len = 140703 bp; # of CRISPR array = 4; # of cas gene = 8  (type I) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 113087-124348 bp Zoom in on locus 1 x2 x5 x3 x4 CRISPR array Location: 113087-113181 bp Num of repeats: 2 Spacers: s1-s1 CRISPR array Location: 113087-113181 bp Num of repeats: 2 Spacers: s1-s1 CRISPR array Location: 113324-113618 bp Num of repeats: 5 Spacers: s2-s5 CRISPR array Location: 113324-113618 bp Num of repeats: 5 Spacers: s2-s5 CRISPR array Location: 113856-114017 bp Num of repeats: 3 Spacers: s6-s7 CRISPR array Location: 113856-114017 bp Num of repeats: 3 Spacers: s6-s7 CRISPR array Location: 114417-114641 bp Num of repeats: 4 Spacers: s8-s10 CRISPR array Location: 114417-114641 bp Num of repeats: 4 Spacers: s8-s10 Gene: cd09725:cas2 Type: universal Location: 114904-115179 bp Gene: cd09722:cas1 Type: universal Location: 115182-116171 bp Gene: cd09639:cas3 Type: Type-I Location: 116755-117726 bp Gene: unk Type: unknown Location: 117626-118027 bp Gene: cd09658:cas5 Type: Subtype-I-B Location: 119106-119807 bp Gene: cd09687:cas7 Type: Subtype-I-B Location: 119809-120723 bp Gene: cd09754:cas8b2 Type: Subtype-I-B Location: 120725-121870 bp Gene: pfam01881:cas6 Type: other Location: 122619-123413 bp Gene: pfam13280:WYL Type: other Location: 123434-124348 bp Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 113087-113181 bp]: array | spacers
           [Locus range 113324-113618 bp]: array | spacers
           [Locus range 113856-114017 bp]: array | spacers
           [Locus range 114417-114641 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 3: CCRS01000089.1 Peptoclostridium difficile genome assembly, contig: NODE_895_length_274026_cov_12.181548, whole genome shotgun sequence

⇒Summary: seq-len = 274052 bp; # of CRISPR array = 3; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 196360-197170 bp 2 Locus 2: 238820-239320 bp Zoom in on locus 1 x4 x2 Zoom in on locus 2 x8 CRISPR array Location: 196360-196587 bp Num of repeats: 4 Spacers: s1-s3 CRISPR array Location: 196360-196587 bp Num of repeats: 4 Spacers: s1-s3 CRISPR array Location: 197076-197170 bp Num of repeats: 2 Spacers: s4-s4 CRISPR array Location: 197076-197170 bp Num of repeats: 2 Spacers: s4-s4 CRISPR array Location: 238820-239320 bp Num of repeats: 8 Spacers: s5-s11 CRISPR array Location: 238820-239320 bp Num of repeats: 8 Spacers: s5-s11 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 196360-196587 bp]: array | spacers
           [Locus range 197076-197170 bp]: array | spacers
           [Locus range 238820-239320 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 4: CCRS01000064.1 Peptoclostridium difficile genome assembly, contig: NODE_516_length_209521_cov_13.283065, whole genome shotgun sequence

⇒Summary: seq-len = 209547 bp; # of CRISPR array = 3; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 0-293 bp 2 Locus 2: 209189-209553 bp Zoom in on locus 1 x5 Zoom in on locus 2 x3 x2 CRISPR array Location: 0-293 bp Num of repeats: 5 Spacers: s1-s4 CRISPR array Location: 0-293 bp Num of repeats: 5 Spacers: s1-s4 CRISPR array Location: 209189-209355 bp Num of repeats: 3 Spacers: s5-s6 CRISPR array Location: 209189-209355 bp Num of repeats: 3 Spacers: s5-s6 CRISPR array Location: 209458-209553 bp Num of repeats: 2 Spacers: s7-s7 CRISPR array Location: 209458-209553 bp Num of repeats: 2 Spacers: s7-s7 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 0-293 bp]: array | spacers
           [Locus range 209189-209355 bp]: array | spacers
           [Locus range 209458-209553 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 5: CCRS01000044.1 Peptoclostridium difficile genome assembly, contig: NODE_340_length_66990_cov_12.276384, whole genome shotgun sequence

⇒Summary: seq-len = 67016 bp; # of CRISPR array = 3; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 366-1057 bp Zoom in on locus 1 x4 x3 x2 CRISPR array Location: 366-594 bp Num of repeats: 4 Spacers: s1-s3 CRISPR array Location: 366-594 bp Num of repeats: 4 Spacers: s1-s3 CRISPR array Location: 699-861 bp Num of repeats: 3 Spacers: s4-s5 CRISPR array Location: 699-861 bp Num of repeats: 3 Spacers: s4-s5 CRISPR array Location: 964-1057 bp Num of repeats: 2 Spacers: s6-s6 CRISPR array Location: 964-1057 bp Num of repeats: 2 Spacers: s6-s6 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 366-594 bp]: array | spacers
           [Locus range 699-861 bp]: array | spacers
           [Locus range 964-1057 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 6: CCRS01000004.1 Peptoclostridium difficile genome assembly, contig: NODE_1058_length_66466_cov_10.657675, whole genome shotgun sequence

⇒Summary: seq-len = 66492 bp; # of CRISPR array = 2; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 58097-58726 bp Zoom in on locus 1 x4 x5 CRISPR array Location: 58097-58321 bp Num of repeats: 4 Spacers: s1-s3 CRISPR array Location: 58097-58321 bp Num of repeats: 4 Spacers: s1-s3 CRISPR array Location: 58429-58726 bp Num of repeats: 5 Spacers: s4-s7 CRISPR array Location: 58429-58726 bp Num of repeats: 5 Spacers: s4-s7 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 58097-58321 bp]: array | spacers
           [Locus range 58429-58726 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 7: CCRS01000090.1 Peptoclostridium difficile genome assembly, contig: NODE_925_length_112579_cov_12.787571, whole genome shotgun sequence

⇒Summary: seq-len = 112605 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 112246-112610 bp Zoom in on locus 1 x6 CRISPR array Location: 112246-112610 bp Num of repeats: 6 Spacers: s1-s5 CRISPR array Location: 112246-112610 bp Num of repeats: 6 Spacers: s1-s5 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 112246-112610 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 8: CCRS01000058.1 Peptoclostridium difficile genome assembly, contig: NODE_444_length_107457_cov_12.928614, whole genome shotgun sequence

⇒Summary: seq-len = 107483 bp; # of CRISPR array = 2; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 82086-84338 bp Zoom in on locus 1 x4 x3 CRISPR array Location: 82086-82311 bp Num of repeats: 4 Spacers: s1-s3 CRISPR array Location: 82086-82311 bp Num of repeats: 4 Spacers: s1-s3 CRISPR array Location: 84175-84338 bp Num of repeats: 3 Spacers: s4-s5 CRISPR array Location: 84175-84338 bp Num of repeats: 3 Spacers: s4-s5 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 82086-82311 bp]: array | spacers
           [Locus range 84175-84338 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 9: CCRS01000075.1 Peptoclostridium difficile genome assembly, contig: NODE_65_length_40868_cov_12.842957, whole genome shotgun sequence

⇒Summary: seq-len = 40894 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 30698-30794 bp Zoom in on locus 1 x2 CRISPR array Location: 30698-30794 bp Num of repeats: 2 Spacers: s1-s1 CRISPR array Location: 30698-30794 bp Num of repeats: 2 Spacers: s1-s1 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 30698-30794 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 10: CCRS01000051.1 Peptoclostridium difficile genome assembly, contig: NODE_398_length_287_cov_9.052265, whole genome shotgun sequence

⇒Summary: seq-len = 313 bp; # of CRISPR array = 2; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 0-316 bp Zoom in on locus 1 x3 x2 CRISPR array Location: 0-157 bp Num of repeats: 3 Spacers: s1-s2 CRISPR array Location: 0-157 bp Num of repeats: 3 Spacers: s1-s2 CRISPR array Location: 221-316 bp Num of repeats: 2 Spacers: s3-s3 CRISPR array Location: 221-316 bp Num of repeats: 2 Spacers: s3-s3 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 0-157 bp]: array | spacers
           [Locus range 221-316 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)