CRISPRone

CRISPRone report for GCA_900005755.1_CD05HE1_ppCDHM1

♦ Seq 1: CUWT01000001.1 Peptoclostridium difficile isolate CD105HE1 genome assembly, contig: contig000001, whole genome shotgun sequence

⇒Summary: seq-len = 533068 bp; # of CRISPR array = 2; # of cas gene = 9  (type I) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 44868-44962 bp 2 Locus 2: 267336-278447 bp Zoom in on locus 1 x2 Zoom in on locus 2 x25 CRISPR array Location: 44868-44962 bp Num of repeats: 2 Spacers: s1-s1 CRISPR array Location: 44868-44962 bp Num of repeats: 2 Spacers: s1-s1 Gene: pfam13280:WYL Type: other Location: 267336-268223 bp Gene: pfam01881:cas6 Type: other Location: 268301-269038 bp Gene: cd09665:cas8b2 Type: Subtype-I-B Location: 269044-270894 bp Gene: cd09687:cas7 Type: Subtype-I-B Location: 270896-271810 bp Gene: cd09658:cas5 Type: Subtype-I-B Location: 271812-272513 bp Gene: COG1203:cas3 Type: Type-I Location: 272524-274845 bp Gene: pfam01930:cas4 Type: Type-I Location: 274860-275411 bp Gene: cd09722:cas1 Type: universal Location: 275414-276394 bp Gene: cd09725:cas2 Type: universal Location: 276397-276663 bp CRISPR array Location: 276847-278447 bp Num of repeats: 25 Spacers: s2-s25 CRISPR array Location: 276847-278447 bp Num of repeats: 25 Spacers: s2-s25 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 44868-44962 bp]: array | spacers
           [Locus range 276847-278447 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 2: CUWT01000021.1 Peptoclostridium difficile isolate CD105HE1 genome assembly, contig: contig000021, whole genome shotgun sequence

⇒Summary: seq-len = 65105 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 3861-5011 bp Zoom in on locus 1 x18 CRISPR array Location: 3861-5011 bp Num of repeats: 18 Spacers: s1-s17 CRISPR array Location: 3861-5011 bp Num of repeats: 18 Spacers: s1-s17 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 3861-5011 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 3: CUWT01000017.1 Peptoclostridium difficile isolate CD105HE1 genome assembly, contig: contig000017, whole genome shotgun sequence

⇒Summary: seq-len = 97227 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 18483-19240 bp Zoom in on locus 1 x12 CRISPR array Location: 18483-19240 bp Num of repeats: 12 Spacers: s1-s11 CRISPR array Location: 18483-19240 bp Num of repeats: 12 Spacers: s1-s11 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 18483-19240 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 4: CUWT01000008.1 Peptoclostridium difficile isolate CD105HE1 genome assembly, contig: contig000008, whole genome shotgun sequence

⇒Summary: seq-len = 216243 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 124789-125348 bp Zoom in on locus 1 x9 CRISPR array Location: 124789-125348 bp Num of repeats: 9 Spacers: s1-s8 CRISPR array Location: 124789-125348 bp Num of repeats: 9 Spacers: s1-s8 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 124789-125348 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 5: CUWT01000010.1 Peptoclostridium difficile isolate CD105HE1 genome assembly, contig: contig000010, whole genome shotgun sequence

⇒Summary: seq-len = 165632 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 55177-55338 bp Zoom in on locus 1 x3 CRISPR array Location: 55177-55338 bp Num of repeats: 3 Spacers: s1-s2 CRISPR array Location: 55177-55338 bp Num of repeats: 3 Spacers: s1-s2 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 55177-55338 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 6: CUWT01000025.1 Peptoclostridium difficile isolate CD105HE1 genome assembly, contig: contig000025, whole genome shotgun sequence

⇒Summary: seq-len = 18626 bp; # of CRISPR array = 3; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 5554-10419 bp Zoom in on locus 1 x7 x4 x13 CRISPR array Location: 5554-5978 bp Num of repeats: 7 Spacers: s1-s6 CRISPR array Location: 5554-5978 bp Num of repeats: 7 Spacers: s1-s6 CRISPR array Location: 7582-7806 bp Num of repeats: 4 Spacers: s7-s9 CRISPR array Location: 7582-7806 bp Num of repeats: 4 Spacers: s7-s9 CRISPR array Location: 9599-10419 bp Num of repeats: 13 Spacers: s10-s21 CRISPR array Location: 9599-10419 bp Num of repeats: 13 Spacers: s10-s21 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 5554-5978 bp]: array | spacers
           [Locus range 7582-7806 bp]: array | spacers
           [Locus range 9599-10419 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 7: CUWT01000002.1 Peptoclostridium difficile isolate CD105HE1 genome assembly, contig: contig000002, whole genome shotgun sequence

⇒Summary: seq-len = 375167 bp; # of CRISPR array = 2; # of cas gene = 6  (type I, III) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 44436-44794 bp 2 Locus 2: 118227-126548 bp 3 Locus 3: 289881-290498 bp Zoom in on locus 1 x6 Zoom in on locus 2 Zoom in on locus 3 x10 CRISPR array Location: 44436-44794 bp Num of repeats: 6 Spacers: s1-s5 CRISPR array Location: 44436-44794 bp Num of repeats: 6 Spacers: s1-s5 Gene: mkCas0101:csm2gr11 Type: Subtype-III-D Location: 118227-119336 bp Gene: unk Type: unknown Location: 119770-119946 bp Gene: pfam01881:cas6 Type: other Location: 120047-120784 bp Gene: pfam09706:cas8b2 Type: Subtype-I-B Location: 120789-122264 bp Gene: cd09687:cas7 Type: Subtype-I-B Location: 122284-123300 bp Gene: cd09693:cas5 Type: Type-I Location: 123316-124113 bp Gene: cd09641:cas3HD Type: Type-I Location: 124140-126548 bp CRISPR array Location: 289881-290498 bp Num of repeats: 10 Spacers: s6-s14 CRISPR array Location: 289881-290498 bp Num of repeats: 10 Spacers: s6-s14 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 44436-44794 bp]: array | spacers
           [Locus range 289881-290498 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)