CRISPRone

CRISPRone report for GCA_900007545.1_ASM90000754v1

♦ Seq 1: CZWK01000019.1 Peptoclostridium difficile isolate VL_0002 genome assembly, contig: NODE_19_length_79896_cov_15.7051_ID_39, whole genome shotgun sequence

⇒Summary: seq-len = 79896 bp; # of CRISPR array = 2; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 23451-25961 bp Zoom in on locus 1 x5 x6 CRISPR array Location: 23451-23740 bp Num of repeats: 5 Spacers: s1-s4 CRISPR array Location: 23451-23740 bp Num of repeats: 5 Spacers: s1-s4 CRISPR array Location: 25605-25961 bp Num of repeats: 6 Spacers: s5-s9 CRISPR array Location: 25605-25961 bp Num of repeats: 6 Spacers: s5-s9 Sorry, your browser does not support inline SVG.

Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 23451-23740 bp]: array | spacers
           [Locus range 25605-25961 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 2: CZWK01000046.1 Peptoclostridium difficile isolate VL_0002 genome assembly, contig: NODE_46_length_31812_cov_12.484_ID_93, whole genome shotgun sequence

⇒Summary: seq-len = 31812 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 30083-31040 bp Zoom in on locus 1 x15 CRISPR array Location: 30083-31040 bp Num of repeats: 15 Spacers: s1-s14 CRISPR array Location: 30083-31040 bp Num of repeats: 15 Spacers: s1-s14 Sorry, your browser does not support inline SVG.

Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 30083-31040 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 3: CZWK01000004.1 Peptoclostridium difficile isolate VL_0002 genome assembly, contig: NODE_4_length_141897_cov_16.779_ID_7, whole genome shotgun sequence

⇒Summary: seq-len = 141897 bp; # of CRISPR array = 1; # of cas gene = 10  (type I) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 16808-27117 bp Zoom in on locus 1 x25 Gene: pfam13280:WYL Type: other Location: 16808-17695 bp Gene: pfam01881:cas6 Type: other Location: 17773-18510 bp Gene: cd09665:cas8b2 Type: Subtype-I-B Location: 18516-20393 bp Gene: cd09687:cas7 Type: Subtype-I-B Location: 20395-21309 bp Gene: cd09658:cas5 Type: Subtype-I-B Location: 21311-22012 bp Gene: COG1203:cas3 Type: Type-I Location: 22023-24344 bp Gene: pfam01930:cas4 Type: Type-I Location: 24359-24910 bp Gene: cd09722:cas1 Type: universal Location: 24913-25893 bp Gene: cd09725:cas2 Type: universal Location: 25896-26162 bp CRISPR array Location: 26346-27964 bp Num of repeats: 25 Spacers: s1-s24 CRISPR array Location: 26346-27964 bp Num of repeats: 25 Spacers: s1-s24 Gene: unk Type: unknown Location: 26495-26662 bp Gene: cls000290:cas8a3 Type: Subtype-I-A Location: 26884-27117 bp Sorry, your browser does not support inline SVG.

Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 26346-27964 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 4: CZWK01000032.1 Peptoclostridium difficile isolate VL_0002 genome assembly, contig: NODE_32_length_48085_cov_13.3537_ID_65, whole genome shotgun sequence

⇒Summary: seq-len = 48085 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 23471-23765 bp Zoom in on locus 1 x5 CRISPR array Location: 23471-23765 bp Num of repeats: 5 Spacers: s1-s4 CRISPR array Location: 23471-23765 bp Num of repeats: 5 Spacers: s1-s4 Sorry, your browser does not support inline SVG.

Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 23471-23765 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 5: CZWK01000021.1 Peptoclostridium difficile isolate VL_0002 genome assembly, contig: NODE_21_length_73081_cov_14.8143_ID_43, whole genome shotgun sequence

⇒Summary: seq-len = 73081 bp; # of CRISPR array = 0; # of cas gene = 6  (type I, III) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 20140-28015 bp Zoom in on locus 1 Gene: mkCas0101:csm2gr11 Type: Subtype-III-D Location: 20140-21249 bp Gene: pfam01881:cas6 Type: other Location: 21508-22245 bp Gene: pfam09706:cas8b2 Type: Subtype-I-B Location: 22250-23725 bp Gene: cd09687:cas7 Type: Subtype-I-B Location: 23745-24758 bp Gene: cd09693:cas5 Type: Type-I Location: 24774-25580 bp Gene: cd09641:cas3HD Type: Type-I Location: 25607-28015 bp Sorry, your browser does not support inline SVG.

Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 6: CZWK01000001.1 Peptoclostridium difficile isolate VL_0002 genome assembly, contig: NODE_1_length_184781_cov_14.6095_ID_1, whole genome shotgun sequence

⇒Summary: seq-len = 184781 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 5864-6550 bp Zoom in on locus 1 x11 CRISPR array Location: 5864-6550 bp Num of repeats: 11 Spacers: s1-s10 CRISPR array Location: 5864-6550 bp Num of repeats: 11 Spacers: s1-s10 Sorry, your browser does not support inline SVG.

Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 5864-6550 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 7: CZWK01000052.1 Peptoclostridium difficile isolate VL_0002 genome assembly, contig: NODE_52_length_27163_cov_9.64014_ID_105, whole genome shotgun sequence

⇒Summary: seq-len = 27163 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 2043-2137 bp Zoom in on locus 1 x2 CRISPR array Location: 2043-2137 bp Num of repeats: 2 Spacers: s1-s1 CRISPR array Location: 2043-2137 bp Num of repeats: 2 Spacers: s1-s1 Sorry, your browser does not support inline SVG.

Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 2043-2137 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 8: CZWK01000009.1 Peptoclostridium difficile isolate VL_0002 genome assembly, contig: NODE_9_length_96396_cov_15.6368_ID_17, whole genome shotgun sequence

⇒Summary: seq-len = 96396 bp; # of CRISPR array = 1; # of cas gene = 5  (type I) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 69345-75877 bp Zoom in on locus 1 x10 CRISPR array Location: 69345-69967 bp Num of repeats: 10 Spacers: s1-s9 CRISPR array Location: 69345-69967 bp Num of repeats: 10 Spacers: s1-s9 Gene: COG1203:cas3 Type: Type-I Location: 70220-72205 bp Gene: cd09687:cas7 Type: Subtype-I-B Location: 72216-73286 bp Gene: cls000029:cas8b2 Type: Subtype-I-B Location: 73307-74473 bp Gene: pfam01881:cas6 Type: other Location: 74475-75239 bp Gene: cd09693:cas5 Type: Type-I Location: 75230-75877 bp Sorry, your browser does not support inline SVG.

Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 69345-69967 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 9: CZWK01000049.1 Peptoclostridium difficile isolate VL_0002 genome assembly, contig: NODE_49_length_28644_cov_11.3066_ID_99, whole genome shotgun sequence

⇒Summary: seq-len = 28644 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 26077-26703 bp Zoom in on locus 1 x10 CRISPR array Location: 26077-26703 bp Num of repeats: 10 Spacers: s1-s9 CRISPR array Location: 26077-26703 bp Num of repeats: 10 Spacers: s1-s9 Sorry, your browser does not support inline SVG.

Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 26077-26703 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 10: CZWK01000056.1 Peptoclostridium difficile isolate VL_0002 genome assembly, contig: NODE_56_length_21143_cov_12.1556_ID_113, whole genome shotgun sequence

⇒Summary: seq-len = 21143 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 19532-20356 bp Zoom in on locus 1 x13 CRISPR array Location: 19532-20356 bp Num of repeats: 13 Spacers: s1-s12 CRISPR array Location: 19532-20356 bp Num of repeats: 13 Spacers: s1-s12 Sorry, your browser does not support inline SVG.

Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 19532-20356 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)