CRISPRone

CRISPRone report for GCA_900069025.1_ASM90006902v1

♦ Seq 1: LN870292.1 Pseudomonas aeruginosa DK1 genome assembly Pseudomonas aeruginosa DK1 substr. NH57388A, chromosome : I

⇒Summary: seq-len = 6212531 bp; # of CRISPR array = 4; # of cas gene = 14  (type I) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 2795174-2805727 bp 2 Locus 2: 4113945-4124941 bp Zoom in on locus 1 x15 x19 Zoom in on locus 2 x18 x12 CRISPR array Location: 2795174-2796037 bp Num of repeats: 15 Spacers: s1-s14 CRISPR array Location: 2795174-2796037 bp Num of repeats: 15 Spacers: s1-s14 Gene: cd09739:cas6f Type: other Location: 2796220-2796783 bp Gene: pfam09615:cas7f Type: Subtype-I-F Location: 2796787-2797815 bp Gene: cd09736:cas5f Type: Subtype-I-F Location: 2797826-2798809 bp Gene: pfam09611:cas8f Type: Subtype-I-F Location: 2798796-2800100 bp Gene: COG1203:cas3 Type: Type-I Location: 2800158-2803388 bp Gene: cd09718:cas1 Type: universal Location: 2803385-2804359 bp CRISPR array Location: 2804621-2805727 bp Num of repeats: 19 Spacers: s15-s32 CRISPR array Location: 2804621-2805727 bp Num of repeats: 19 Spacers: s15-s32 CRISPR array Location: 4113945-4115010 bp Num of repeats: 18 Spacers: s33-s49 CRISPR array Location: 4113945-4115010 bp Num of repeats: 18 Spacers: s33-s49 Gene: pfam09707:cas2 Type: universal Location: 4115075-4115374 bp Gene: cd09719:cas1 Type: universal Location: 4115371-4116261 bp Gene: pfam08798:cas6e Type: other Location: 4116288-4116827 bp Gene: cd09756:cas5 Type: Subtype-I-E Location: 4116874-4117536 bp Gene: pfam09344:cas7 Type: Subtype-I-E Location: 4117538-4118680 bp Gene: cd09731:cse2gr11 Type: Subtype-I-E Location: 4118690-4119220 bp Gene: pfam09481:cas8e Type: Subtype-I-E Location: 4119217-4120785 bp Gene: cd09641:cas3HD Type: Type-I Location: 4120788-4123469 bp CRISPR array Location: 4124242-4124941 bp Num of repeats: 12 Spacers: s50-s60 CRISPR array Location: 4124242-4124941 bp Num of repeats: 12 Spacers: s50-s60 Sorry, your browser does not support inline SVG.

Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 2795174-2796037 bp]: array | spacers
           [Locus range 2804621-2805727 bp]: array | spacers
           [Locus range 4113945-4115010 bp]: array | spacers
           [Locus range 4124242-4124941 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)