CRISPRone

CRISPRone report for GCA_900073125.1_CD105KSE5

♦ Seq 1: FJOJ01000012.1 Peptoclostridium difficile strain CD105KSE5 genome assembly, contig: {contig12}, whole genome shotgun sequence

⇒Summary: seq-len = 63873 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 17870-18557 bp Zoom in on locus 1 x11 CRISPR array Location: 17870-18557 bp Num of repeats: 11 Spacers: s1-s10 CRISPR array Location: 17870-18557 bp Num of repeats: 11 Spacers: s1-s10 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 17870-18557 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 2: FJOJ01000019.1 Peptoclostridium difficile strain CD105KSE5 genome assembly, contig: {contig19}, whole genome shotgun sequence

⇒Summary: seq-len = 479623 bp; # of CRISPR array = 1; # of cas gene = 6  (type I, III) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 225184-233527 bp 2 Locus 2: 306808-307033 bp Zoom in on locus 1 Zoom in on locus 2 x4 Gene: cd09641:cas3HD Type: Type-I Location: 225184-227592 bp Gene: cd09693:cas5 Type: Type-I Location: 227619-228416 bp Gene: cd09687:cas7 Type: Subtype-I-B Location: 228432-229445 bp Gene: pfam09706:cas8b2 Type: Subtype-I-B Location: 229465-230940 bp Gene: pfam01881:cas6 Type: other Location: 230945-231682 bp Gene: unk Type: unknown Location: 231783-231959 bp Gene: mkCas0101:csm2gr11 Type: Subtype-III-D Location: 232418-233527 bp CRISPR array Location: 306808-307033 bp Num of repeats: 4 Spacers: s1-s3 CRISPR array Location: 306808-307033 bp Num of repeats: 4 Spacers: s1-s3 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 306808-307033 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 3: FJOJ01000011.1 Peptoclostridium difficile strain CD105KSE5 genome assembly, contig: {contig11}, whole genome shotgun sequence

⇒Summary: seq-len = 211446 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 118553-119239 bp Zoom in on locus 1 x11 CRISPR array Location: 118553-119239 bp Num of repeats: 11 Spacers: s1-s10 CRISPR array Location: 118553-119239 bp Num of repeats: 11 Spacers: s1-s10 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 118553-119239 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 4: FJOJ01000010.1 Peptoclostridium difficile strain CD105KSE5 genome assembly, contig: {contig10}, whole genome shotgun sequence

⇒Summary: seq-len = 277022 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 189907-190662 bp Zoom in on locus 1 x12 CRISPR array Location: 189907-190662 bp Num of repeats: 12 Spacers: s1-s11 CRISPR array Location: 189907-190662 bp Num of repeats: 12 Spacers: s1-s11 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 189907-190662 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 5: FJOJ01000016.1 Peptoclostridium difficile strain CD105KSE5 genome assembly, contig: {contig16}, whole genome shotgun sequence

⇒Summary: seq-len = 189248 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 179605-179959 bp Zoom in on locus 1 x6 CRISPR array Location: 179605-179959 bp Num of repeats: 6 Spacers: s1-s5 CRISPR array Location: 179605-179959 bp Num of repeats: 6 Spacers: s1-s5 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 179605-179959 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 6: FJOJ01000017.1 Peptoclostridium difficile strain CD105KSE5 genome assembly, contig: {contig17}, whole genome shotgun sequence

⇒Summary: seq-len = 111361 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 52280-54347 bp Zoom in on locus 1 x32 CRISPR array Location: 52280-54347 bp Num of repeats: 32 Spacers: s1-s31 CRISPR array Location: 52280-54347 bp Num of repeats: 32 Spacers: s1-s31 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 52280-54347 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 7: FJOJ01000013.1 Peptoclostridium difficile strain CD105KSE5 genome assembly, contig: {contig13}, whole genome shotgun sequence

⇒Summary: seq-len = 314991 bp; # of CRISPR array = 2; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 36057-36217 bp 2 Locus 2: 174938-175622 bp Zoom in on locus 1 x3 Zoom in on locus 2 x11 CRISPR array Location: 36057-36217 bp Num of repeats: 3 Spacers: s1-s2 CRISPR array Location: 36057-36217 bp Num of repeats: 3 Spacers: s1-s2 CRISPR array Location: 174938-175622 bp Num of repeats: 11 Spacers: s3-s12 CRISPR array Location: 174938-175622 bp Num of repeats: 11 Spacers: s3-s12 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 36057-36217 bp]: array | spacers
           [Locus range 174938-175622 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)