CRISPRone

CRISPRone report for GCA_900073255.1_CD105KSE2

♦ Seq 1: FJQG01000011.1 Peptoclostridium difficile strain CD105KSE2 genome assembly, contig: {contig11}, whole genome shotgun sequence

⇒Summary: seq-len = 88640 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 59724-60479 bp Zoom in on locus 1 x12 CRISPR array Location: 59724-60479 bp Num of repeats: 12 Spacers: s1-s11 CRISPR array Location: 59724-60479 bp Num of repeats: 12 Spacers: s1-s11 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 59724-60479 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 2: FJQG01000017.1 Peptoclostridium difficile strain CD105KSE2 genome assembly, contig: {contig17}, whole genome shotgun sequence

⇒Summary: seq-len = 49509 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 3540-4427 bp Zoom in on locus 1 x14 CRISPR array Location: 3540-4427 bp Num of repeats: 14 Spacers: s1-s13 CRISPR array Location: 3540-4427 bp Num of repeats: 14 Spacers: s1-s13 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 3540-4427 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 3: FJQG01000033.1 Peptoclostridium difficile strain CD105KSE2 genome assembly, contig: {contig33}, whole genome shotgun sequence

⇒Summary: seq-len = 180336 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 9314-9540 bp Zoom in on locus 1 x4 CRISPR array Location: 9314-9540 bp Num of repeats: 4 Spacers: s1-s3 CRISPR array Location: 9314-9540 bp Num of repeats: 4 Spacers: s1-s3 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 9314-9540 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 4: FJQG01000013.1 Peptoclostridium difficile strain CD105KSE2 genome assembly, contig: {contig13}, whole genome shotgun sequence

⇒Summary: seq-len = 203451 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 118246-118537 bp Zoom in on locus 1 x5 CRISPR array Location: 118246-118537 bp Num of repeats: 5 Spacers: s1-s4 CRISPR array Location: 118246-118537 bp Num of repeats: 5 Spacers: s1-s4 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 118246-118537 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 5: FJQG01000024.1 Peptoclostridium difficile strain CD105KSE2 genome assembly, contig: {contig24}, whole genome shotgun sequence

⇒Summary: seq-len = 123529 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 13561-15432 bp Zoom in on locus 1 x29 CRISPR array Location: 13561-15432 bp Num of repeats: 29 Spacers: s1-s28 CRISPR array Location: 13561-15432 bp Num of repeats: 29 Spacers: s1-s28 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 13561-15432 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 6: FJQG01000016.1 Peptoclostridium difficile strain CD105KSE2 genome assembly, contig: {contig16}, whole genome shotgun sequence

⇒Summary: seq-len = 178110 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 46075-46237 bp Zoom in on locus 1 x3 CRISPR array Location: 46075-46237 bp Num of repeats: 3 Spacers: s1-s2 CRISPR array Location: 46075-46237 bp Num of repeats: 3 Spacers: s1-s2 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 46075-46237 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 7: FJQG01000023.1 Peptoclostridium difficile strain CD105KSE2 genome assembly, contig: {contig23}, whole genome shotgun sequence

⇒Summary: seq-len = 38272 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 5559-5849 bp Zoom in on locus 1 x5 CRISPR array Location: 5559-5849 bp Num of repeats: 5 Spacers: s1-s4 CRISPR array Location: 5559-5849 bp Num of repeats: 5 Spacers: s1-s4 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 5559-5849 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 8: FJQG01000005.1 Peptoclostridium difficile strain CD105KSE2 genome assembly, contig: {contig5}, whole genome shotgun sequence

⇒Summary: seq-len = 227992 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 85437-85597 bp Zoom in on locus 1 x3 CRISPR array Location: 85437-85597 bp Num of repeats: 3 Spacers: s1-s2 CRISPR array Location: 85437-85597 bp Num of repeats: 3 Spacers: s1-s2 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 85437-85597 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 9: FJQG01000015.1 Peptoclostridium difficile strain CD105KSE2 genome assembly, contig: {contig15}, whole genome shotgun sequence

⇒Summary: seq-len = 64360 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 18299-18986 bp Zoom in on locus 1 x11 CRISPR array Location: 18299-18986 bp Num of repeats: 11 Spacers: s1-s10 CRISPR array Location: 18299-18986 bp Num of repeats: 11 Spacers: s1-s10 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 18299-18986 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 10: FJQG01000027.1 Peptoclostridium difficile strain CD105KSE2 genome assembly, contig: {contig27}, whole genome shotgun sequence

⇒Summary: seq-len = 246567 bp; # of CRISPR array = 1; # of cas gene = 6  (type I, III) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 69683-78026 bp 2 Locus 2: 151309-151534 bp Zoom in on locus 1 Zoom in on locus 2 x4 Gene: cd09641:cas3HD Type: Type-I Location: 69683-72091 bp Gene: cd09693:cas5 Type: Type-I Location: 72118-72915 bp Gene: cd09687:cas7 Type: Subtype-I-B Location: 72931-73944 bp Gene: pfam09706:cas8b2 Type: Subtype-I-B Location: 73964-75439 bp Gene: pfam01881:cas6 Type: other Location: 75444-76181 bp Gene: unk Type: unknown Location: 76282-76458 bp Gene: mkCas0101:csm2gr11 Type: Subtype-III-D Location: 76917-78026 bp CRISPR array Location: 151309-151534 bp Num of repeats: 4 Spacers: s1-s3 CRISPR array Location: 151309-151534 bp Num of repeats: 4 Spacers: s1-s3 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 151309-151534 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)