CRISPRone

CRISPRone report for GCA_900074635.1_CD105KSE3

♦ Seq 1: FJUF01000020.1 Peptoclostridium difficile strain CD105KSE3 genome assembly, contig: {contig20}, whole genome shotgun sequence

⇒Summary: seq-len = 161100 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 75309-76193 bp Zoom in on locus 1 x14 CRISPR array Location: 75309-76193 bp Num of repeats: 14 Spacers: s1-s13 CRISPR array Location: 75309-76193 bp Num of repeats: 14 Spacers: s1-s13 Sorry, your browser does not support inline SVG.

Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 75309-76193 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 2: FJUF01000108.1 Peptoclostridium difficile strain CD105KSE3 genome assembly, contig: {contig108}, whole genome shotgun sequence

⇒Summary: seq-len = 12672 bp; # of CRISPR array = 3; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 2008-7677 bp Zoom in on locus 1 x5 x5 x2 CRISPR array Location: 2008-2301 bp Num of repeats: 5 Spacers: s1-s4 CRISPR array Location: 2008-2301 bp Num of repeats: 5 Spacers: s1-s4 CRISPR array Location: 4944-5237 bp Num of repeats: 5 Spacers: s5-s8 CRISPR array Location: 4944-5237 bp Num of repeats: 5 Spacers: s5-s8 CRISPR array Location: 7584-7677 bp Num of repeats: 2 Spacers: s9-s9 CRISPR array Location: 7584-7677 bp Num of repeats: 2 Spacers: s9-s9 Sorry, your browser does not support inline SVG.

Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 2008-2301 bp]: array | spacers
           [Locus range 4944-5237 bp]: array | spacers
           [Locus range 7584-7677 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 3: FJUF01000022.1 Peptoclostridium difficile strain CD105KSE3 genome assembly, contig: {contig22}, whole genome shotgun sequence

⇒Summary: seq-len = 246485 bp; # of CRISPR array = 2; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 17994-18421 bp 2 Locus 2: 191996-193407 bp Zoom in on locus 1 x7 Zoom in on locus 2 x22 CRISPR array Location: 17994-18421 bp Num of repeats: 7 Spacers: s1-s6 CRISPR array Location: 17994-18421 bp Num of repeats: 7 Spacers: s1-s6 CRISPR array Location: 191996-193407 bp Num of repeats: 22 Spacers: s7-s27 CRISPR array Location: 191996-193407 bp Num of repeats: 22 Spacers: s7-s27 Sorry, your browser does not support inline SVG.

Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 17994-18421 bp]: array | spacers
           [Locus range 191996-193407 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 4: FJUF01000015.1 Peptoclostridium difficile strain CD105KSE3 genome assembly, contig: {contig15}, whole genome shotgun sequence

⇒Summary: seq-len = 81340 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 60682-60843 bp Zoom in on locus 1 x3 CRISPR array Location: 60682-60843 bp Num of repeats: 3 Spacers: s1-s2 CRISPR array Location: 60682-60843 bp Num of repeats: 3 Spacers: s1-s2 Sorry, your browser does not support inline SVG.

Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 60682-60843 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 5: FJUF01000035.1 Peptoclostridium difficile strain CD105KSE3 genome assembly, contig: {contig35}, whole genome shotgun sequence

⇒Summary: seq-len = 368190 bp; # of CRISPR array = 1; # of cas gene = 6  (type I, III) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 163325-163746 bp 2 Locus 2: 329290-337155 bp Zoom in on locus 1 x7 Zoom in on locus 2 CRISPR array Location: 163325-163746 bp Num of repeats: 7 Spacers: s1-s6 CRISPR array Location: 163325-163746 bp Num of repeats: 7 Spacers: s1-s6 Gene: cd09641:cas3HD Type: Type-I Location: 329290-331698 bp Gene: cd09693:cas5 Type: Type-I Location: 331725-332522 bp Gene: cd09687:cas7 Type: Subtype-I-B Location: 332538-333551 bp Gene: pfam09706:cas8b2 Type: Subtype-I-B Location: 333571-335046 bp Gene: pfam01881:cas6 Type: other Location: 335051-335788 bp Gene: mkCas0101:csm2gr11 Type: Subtype-III-D Location: 336046-337155 bp Sorry, your browser does not support inline SVG.

Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 163325-163746 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 6: FJUF01000036.1 Peptoclostridium difficile strain CD105KSE3 genome assembly, contig: {contig36}, whole genome shotgun sequence

⇒Summary: seq-len = 72578 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 42501-42996 bp Zoom in on locus 1 x8 CRISPR array Location: 42501-42996 bp Num of repeats: 8 Spacers: s1-s7 CRISPR array Location: 42501-42996 bp Num of repeats: 8 Spacers: s1-s7 Sorry, your browser does not support inline SVG.

Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 42501-42996 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 7: FJUF01000040.1 Peptoclostridium difficile strain CD105KSE3 genome assembly, contig: {contig40}, whole genome shotgun sequence

⇒Summary: seq-len = 72791 bp; # of CRISPR array = 1; # of cas gene = 9  (type I) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 7458-17571 bp Zoom in on locus 1 x9 CRISPR array Location: 7458-8006 bp Num of repeats: 9 Spacers: s1-s8 CRISPR array Location: 7458-8006 bp Num of repeats: 9 Spacers: s1-s8 Gene: cd09725:cas2 Type: universal Location: 8190-8456 bp Gene: cd09722:cas1 Type: universal Location: 8459-9439 bp Gene: pfam01930:cas4 Type: Type-I Location: 9523-9960 bp Gene: COG1203:cas3 Type: Type-I Location: 10008-12329 bp Gene: cd09658:cas5 Type: Subtype-I-B Location: 12340-13041 bp Gene: cd09687:cas7 Type: Subtype-I-B Location: 13043-13957 bp Gene: cd09665:cas8b2 Type: Subtype-I-B Location: 13959-15836 bp Gene: pfam01881:cas6 Type: other Location: 15842-16636 bp Gene: pfam13280:WYL Type: other Location: 16657-17571 bp Sorry, your browser does not support inline SVG.

Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 7458-8006 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 8: FJUF01000084.1 Peptoclostridium difficile strain CD105KSE3 genome assembly, contig: {contig84}, whole genome shotgun sequence

⇒Summary: seq-len = 11906 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 5883-6836 bp Zoom in on locus 1 x15 CRISPR array Location: 5883-6836 bp Num of repeats: 15 Spacers: s1-s14 CRISPR array Location: 5883-6836 bp Num of repeats: 15 Spacers: s1-s14 Sorry, your browser does not support inline SVG.

Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 5883-6836 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)