CRISPRone

CRISPRone report for GCA_900074645.1_CD105KSE4

♦ Seq 1: FJUG01000311.1 Peptoclostridium difficile strain CD105KSE4 genome assembly, contig: {contig311}, whole genome shotgun sequence

⇒Summary: seq-len = 436201 bp; # of CRISPR array = 1; # of cas gene = 6  (type I, III) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 214735-215231 bp 2 Locus 2: 288513-296378 bp Zoom in on locus 1 x8 Zoom in on locus 2 CRISPR array Location: 214735-215231 bp Num of repeats: 8 Spacers: s1-s7 CRISPR array Location: 214735-215231 bp Num of repeats: 8 Spacers: s1-s7 Gene: mkCas0101:csm2gr11 Type: Subtype-III-D Location: 288513-289622 bp Gene: pfam01881:cas6 Type: other Location: 289880-290617 bp Gene: pfam09706:cas8b2 Type: Subtype-I-B Location: 290622-292097 bp Gene: cd09687:cas7 Type: Subtype-I-B Location: 292117-293130 bp Gene: cd09693:cas5 Type: Type-I Location: 293146-293943 bp Gene: cd09641:cas3HD Type: Type-I Location: 293970-296378 bp Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 214735-215231 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 2: FJUG01000303.1 Peptoclostridium difficile strain CD105KSE4 genome assembly, contig: {contig303}, whole genome shotgun sequence

⇒Summary: seq-len = 464023 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 133660-134613 bp Zoom in on locus 1 x15 CRISPR array Location: 133660-134613 bp Num of repeats: 15 Spacers: s1-s14 CRISPR array Location: 133660-134613 bp Num of repeats: 15 Spacers: s1-s14 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 133660-134613 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 3: FJUG01000163.1 Peptoclostridium difficile strain CD105KSE4 genome assembly, contig: {contig163}, whole genome shotgun sequence

⇒Summary: seq-len = 142535 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 6494-7904 bp Zoom in on locus 1 x22 CRISPR array Location: 6494-7904 bp Num of repeats: 22 Spacers: s1-s21 CRISPR array Location: 6494-7904 bp Num of repeats: 22 Spacers: s1-s21 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 6494-7904 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 4: FJUG01000198.1 Peptoclostridium difficile strain CD105KSE4 genome assembly, contig: {contig198}, whole genome shotgun sequence

⇒Summary: seq-len = 108317 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 16477-17361 bp Zoom in on locus 1 x14 CRISPR array Location: 16477-17361 bp Num of repeats: 14 Spacers: s1-s13 CRISPR array Location: 16477-17361 bp Num of repeats: 14 Spacers: s1-s13 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 16477-17361 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 5: FJUG01000365.1 Peptoclostridium difficile strain CD105KSE4 genome assembly, contig: {contig365}, whole genome shotgun sequence

⇒Summary: seq-len = 160689 bp; # of CRISPR array = 1; # of cas gene = 9  (type I) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 7477-17590 bp Zoom in on locus 1 x9 CRISPR array Location: 7477-8025 bp Num of repeats: 9 Spacers: s1-s8 CRISPR array Location: 7477-8025 bp Num of repeats: 9 Spacers: s1-s8 Gene: cd09725:cas2 Type: universal Location: 8209-8475 bp Gene: cd09722:cas1 Type: universal Location: 8478-9458 bp Gene: pfam01930:cas4 Type: Type-I Location: 9542-9979 bp Gene: COG1203:cas3 Type: Type-I Location: 10027-12348 bp Gene: cd09658:cas5 Type: Subtype-I-B Location: 12359-13060 bp Gene: cd09687:cas7 Type: Subtype-I-B Location: 13062-13976 bp Gene: cd09665:cas8b2 Type: Subtype-I-B Location: 13978-15855 bp Gene: pfam01881:cas6 Type: other Location: 15861-16655 bp Gene: pfam13280:WYL Type: other Location: 16676-17590 bp Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 7477-8025 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 6: FJUG01000077.1 Peptoclostridium difficile strain CD105KSE4 genome assembly, contig: {contig77}, whole genome shotgun sequence

⇒Summary: seq-len = 38390 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 3592-4014 bp Zoom in on locus 1 x7 CRISPR array Location: 3592-4014 bp Num of repeats: 7 Spacers: s1-s6 CRISPR array Location: 3592-4014 bp Num of repeats: 7 Spacers: s1-s6 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 3592-4014 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 7: FJUG01000254.1 Peptoclostridium difficile strain CD105KSE4 genome assembly, contig: {contig254}, whole genome shotgun sequence

⇒Summary: seq-len = 57702 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 39148-39574 bp Zoom in on locus 1 x7 CRISPR array Location: 39148-39574 bp Num of repeats: 7 Spacers: s1-s6 CRISPR array Location: 39148-39574 bp Num of repeats: 7 Spacers: s1-s6 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 39148-39574 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)