CRISPRone

CRISPRone report for GCA_900074805.1_CD105KSO8

♦ Seq 1: FJUI01000022.1 Peptoclostridium difficile strain CD105KSO8 genome assembly, contig: {contig22}, whole genome shotgun sequence

⇒Summary: seq-len = 136777 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 80238-80313 bp Zoom in on locus 1 x2 CRISPR array Location: 80238-80313 bp Num of repeats: 2 Spacers: s1-s1 CRISPR array Location: 80238-80313 bp Num of repeats: 2 Spacers: s1-s1 Sorry, your browser does not support inline SVG.

Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 80238-80313 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 2: FJUI01000069.1 Peptoclostridium difficile strain CD105KSO8 genome assembly, contig: {contig69}, whole genome shotgun sequence

⇒Summary: seq-len = 83489 bp; # of CRISPR array = 2; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 23568-23665 bp 2 Locus 2: 80822-80919 bp Zoom in on locus 1 x2 Zoom in on locus 2 x2 CRISPR array Location: 23568-23665 bp Num of repeats: 2 Spacers: s1-s1 CRISPR array Location: 23568-23665 bp Num of repeats: 2 Spacers: s1-s1 CRISPR array Location: 80822-80919 bp Num of repeats: 2 Spacers: s2-s2 CRISPR array Location: 80822-80919 bp Num of repeats: 2 Spacers: s2-s2 Sorry, your browser does not support inline SVG.

Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 23568-23665 bp]: array | spacers
           [Locus range 80822-80919 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 3: FJUI01000008.1 Peptoclostridium difficile strain CD105KSO8 genome assembly, contig: {contig8}, whole genome shotgun sequence

⇒Summary: seq-len = 275378 bp; # of CRISPR array = 0; # of cas gene = 2  (type I) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 186087-188140 bp Zoom in on locus 1 Gene: cd09718:cas1 Type: universal Location: 186087-187742 bp Gene: COG0640:csa3 Type: Subtype-I-A Location: 187754-188140 bp Sorry, your browser does not support inline SVG.

Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 4: FJUI01000015.1 Peptoclostridium difficile strain CD105KSO8 genome assembly, contig: {contig15}, whole genome shotgun sequence

⇒Summary: seq-len = 82895 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 62512-64244 bp Zoom in on locus 1 x27 CRISPR array Location: 62512-64244 bp Num of repeats: 27 Spacers: s1-s26 CRISPR array Location: 62512-64244 bp Num of repeats: 27 Spacers: s1-s26 Sorry, your browser does not support inline SVG.

Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 62512-64244 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 5: FJUI01000038.1 Peptoclostridium difficile strain CD105KSO8 genome assembly, contig: {contig38}, whole genome shotgun sequence

⇒Summary: seq-len = 608120 bp; # of CRISPR array = 2; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 342463-343017 bp 2 Locus 2: 372145-372699 bp Zoom in on locus 1 x9 Zoom in on locus 2 x9 CRISPR array Location: 342463-343017 bp Num of repeats: 9 Spacers: s1-s8 CRISPR array Location: 342463-343017 bp Num of repeats: 9 Spacers: s1-s8 CRISPR array Location: 372145-372699 bp Num of repeats: 9 Spacers: s9-s16 CRISPR array Location: 372145-372699 bp Num of repeats: 9 Spacers: s9-s16 Sorry, your browser does not support inline SVG.

Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 342463-343017 bp]: array | spacers
           [Locus range 372145-372699 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)