CRISPRone

CRISPRone report for GCA_900074815.1_CD105KSO10

♦ Seq 1: FJUK01000076.1 Peptoclostridium difficile strain CD105KSO10 genome assembly, contig: {contig76}, whole genome shotgun sequence

⇒Summary: seq-len = 50445 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 4159-4384 bp Zoom in on locus 1 x4 CRISPR array Location: 4159-4384 bp Num of repeats: 4 Spacers: s1-s3 CRISPR array Location: 4159-4384 bp Num of repeats: 4 Spacers: s1-s3 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 4159-4384 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 2: FJUK01000007.1 Peptoclostridium difficile strain CD105KSO10 genome assembly, contig: {contig7}, whole genome shotgun sequence

⇒Summary: seq-len = 97843 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 69374-69534 bp Zoom in on locus 1 x3 CRISPR array Location: 69374-69534 bp Num of repeats: 3 Spacers: s1-s2 CRISPR array Location: 69374-69534 bp Num of repeats: 3 Spacers: s1-s2 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 69374-69534 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 3: FJUK01000029.1 Peptoclostridium difficile strain CD105KSO10 genome assembly, contig: {contig29}, whole genome shotgun sequence

⇒Summary: seq-len = 82097 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 20033-20324 bp Zoom in on locus 1 x5 CRISPR array Location: 20033-20324 bp Num of repeats: 5 Spacers: s1-s4 CRISPR array Location: 20033-20324 bp Num of repeats: 5 Spacers: s1-s4 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 20033-20324 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 4: FJUK01000027.1 Peptoclostridium difficile strain CD105KSO10 genome assembly, contig: {contig27}, whole genome shotgun sequence

⇒Summary: seq-len = 201841 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 114727-115482 bp Zoom in on locus 1 x12 CRISPR array Location: 114727-115482 bp Num of repeats: 12 Spacers: s1-s11 CRISPR array Location: 114727-115482 bp Num of repeats: 12 Spacers: s1-s11 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 114727-115482 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 5: FJUK01000075.1 Peptoclostridium difficile strain CD105KSO10 genome assembly, contig: {contig75}, whole genome shotgun sequence

⇒Summary: seq-len = 143098 bp; # of CRISPR array = 0; # of cas gene = 6  (type I, III) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 65353-73696 bp Zoom in on locus 1 Gene: cd09641:cas3HD Type: Type-I Location: 65353-67761 bp Gene: cd09693:cas5 Type: Type-I Location: 67788-68585 bp Gene: cd09687:cas7 Type: Subtype-I-B Location: 68601-69614 bp Gene: pfam09706:cas8b2 Type: Subtype-I-B Location: 69634-71109 bp Gene: pfam01881:cas6 Type: other Location: 71114-71851 bp Gene: unk Type: unknown Location: 71952-72128 bp Gene: mkCas0101:csm2gr11 Type: Subtype-III-D Location: 72587-73696 bp Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 6: FJUK01000094.1 Peptoclostridium difficile strain CD105KSO10 genome assembly, contig: {contig94}, whole genome shotgun sequence

⇒Summary: seq-len = 79714 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 9314-9540 bp Zoom in on locus 1 x4 CRISPR array Location: 9314-9540 bp Num of repeats: 4 Spacers: s1-s3 CRISPR array Location: 9314-9540 bp Num of repeats: 4 Spacers: s1-s3 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 9314-9540 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 7: FJUK01000050.1 Peptoclostridium difficile strain CD105KSO10 genome assembly, contig: {contig50}, whole genome shotgun sequence

⇒Summary: seq-len = 23185 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 5272-5562 bp Zoom in on locus 1 x5 CRISPR array Location: 5272-5562 bp Num of repeats: 5 Spacers: s1-s4 CRISPR array Location: 5272-5562 bp Num of repeats: 5 Spacers: s1-s4 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 5272-5562 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 8: FJUK01000038.1 Peptoclostridium difficile strain CD105KSO10 genome assembly, contig: {contig38}, whole genome shotgun sequence

⇒Summary: seq-len = 5231 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 3499-4386 bp Zoom in on locus 1 x14 CRISPR array Location: 3499-4386 bp Num of repeats: 14 Spacers: s1-s13 CRISPR array Location: 3499-4386 bp Num of repeats: 14 Spacers: s1-s13 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 3499-4386 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 9: FJUK01000033.1 Peptoclostridium difficile strain CD105KSO10 genome assembly, contig: {contig33}, whole genome shotgun sequence

⇒Summary: seq-len = 49040 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 2965-3652 bp Zoom in on locus 1 x11 CRISPR array Location: 2965-3652 bp Num of repeats: 11 Spacers: s1-s10 CRISPR array Location: 2965-3652 bp Num of repeats: 11 Spacers: s1-s10 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 2965-3652 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 10: FJUK01000035.1 Peptoclostridium difficile strain CD105KSO10 genome assembly, contig: {contig35}, whole genome shotgun sequence

⇒Summary: seq-len = 88111 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 43668-43830 bp Zoom in on locus 1 x3 CRISPR array Location: 43668-43830 bp Num of repeats: 3 Spacers: s1-s2 CRISPR array Location: 43668-43830 bp Num of repeats: 3 Spacers: s1-s2 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 43668-43830 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 11: FJUK01000054.1 Peptoclostridium difficile strain CD105KSO10 genome assembly, contig: {contig54}, whole genome shotgun sequence

⇒Summary: seq-len = 17900 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 2843-4714 bp Zoom in on locus 1 x29 CRISPR array Location: 2843-4714 bp Num of repeats: 29 Spacers: s1-s28 CRISPR array Location: 2843-4714 bp Num of repeats: 29 Spacers: s1-s28 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 2843-4714 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)