CRISPRone

CRISPRone report for GCA_900074825.1_CD105KSO11

♦ Seq 1: FJVK01000098.1 Peptoclostridium difficile strain CD105KSE11 genome assembly, contig: {contig98}, whole genome shotgun sequence

⇒Summary: seq-len = 1533 bp; # of CRISPR array = 0; # of cas gene = 2  NA .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 2-1161 bp Zoom in on locus 1 Gene: COG1518:cas1 Type: universal Location: 2-640 bp Gene: pfam01930:cas4 Type: Type-I Location: 724-1161 bp Sorry, your browser does not support inline SVG.

Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 2: FJVK01000085.1 Peptoclostridium difficile strain CD105KSE11 genome assembly, contig: {contig85}, whole genome shotgun sequence

⇒Summary: seq-len = 315064 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 74520-74745 bp Zoom in on locus 1 x4 CRISPR array Location: 74520-74745 bp Num of repeats: 4 Spacers: s1-s3 CRISPR array Location: 74520-74745 bp Num of repeats: 4 Spacers: s1-s3 Sorry, your browser does not support inline SVG.

Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 74520-74745 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 3: FJVK01000399.1 Peptoclostridium difficile strain CD105KSE11 genome assembly, contig: {contig399}, whole genome shotgun sequence

⇒Summary: seq-len = 731 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 147-631 bp Zoom in on locus 1 x8 CRISPR array Location: 147-631 bp Num of repeats: 8 Spacers: s1-s7 CRISPR array Location: 147-631 bp Num of repeats: 8 Spacers: s1-s7 Sorry, your browser does not support inline SVG.

Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 147-631 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 4: FJVK01000225.1 Peptoclostridium difficile strain CD105KSE11 genome assembly, contig: {contig225}, whole genome shotgun sequence

⇒Summary: seq-len = 440 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 58-416 bp Zoom in on locus 1 x6 CRISPR array Location: 58-416 bp Num of repeats: 6 Spacers: s1-s5 CRISPR array Location: 58-416 bp Num of repeats: 6 Spacers: s1-s5 Sorry, your browser does not support inline SVG.

Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 58-416 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 5: FJVK01000075.1 Peptoclostridium difficile strain CD105KSE11 genome assembly, contig: {contig75}, whole genome shotgun sequence

⇒Summary: seq-len = 23639 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 2708-4775 bp Zoom in on locus 1 x32 CRISPR array Location: 2708-4775 bp Num of repeats: 32 Spacers: s1-s31 CRISPR array Location: 2708-4775 bp Num of repeats: 32 Spacers: s1-s31 Sorry, your browser does not support inline SVG.

Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 2708-4775 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 6: FJVK01000045.1 Peptoclostridium difficile strain CD105KSE11 genome assembly, contig: {contig45}, whole genome shotgun sequence

⇒Summary: seq-len = 90242 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 59654-60409 bp Zoom in on locus 1 x12 CRISPR array Location: 59654-60409 bp Num of repeats: 12 Spacers: s1-s11 CRISPR array Location: 59654-60409 bp Num of repeats: 12 Spacers: s1-s11 Sorry, your browser does not support inline SVG.

Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 59654-60409 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 7: FJVK01000053.1 Peptoclostridium difficile strain CD105KSE11 genome assembly, contig: {contig53}, whole genome shotgun sequence

⇒Summary: seq-len = 57242 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 17870-18557 bp Zoom in on locus 1 x11 CRISPR array Location: 17870-18557 bp Num of repeats: 11 Spacers: s1-s10 CRISPR array Location: 17870-18557 bp Num of repeats: 11 Spacers: s1-s10 Sorry, your browser does not support inline SVG.

Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 17870-18557 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 8: FJVK01000050.1 Peptoclostridium difficile strain CD105KSE11 genome assembly, contig: {contig50}, whole genome shotgun sequence

⇒Summary: seq-len = 105440 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 98629-99315 bp Zoom in on locus 1 x11 CRISPR array Location: 98629-99315 bp Num of repeats: 11 Spacers: s1-s10 CRISPR array Location: 98629-99315 bp Num of repeats: 11 Spacers: s1-s10 Sorry, your browser does not support inline SVG.

Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 98629-99315 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 9: FJVK01000460.1 Peptoclostridium difficile strain CD105KSE11 genome assembly, contig: {contig460}, whole genome shotgun sequence

⇒Summary: seq-len = 392 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 1-361 bp Zoom in on locus 1 x6 CRISPR array Location: 1-361 bp Num of repeats: 6 Spacers: s1-s5 CRISPR array Location: 1-361 bp Num of repeats: 6 Spacers: s1-s5 Sorry, your browser does not support inline SVG.

Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 1-361 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 10: FJVK01000348.1 Peptoclostridium difficile strain CD105KSE11 genome assembly, contig: {contig348}, whole genome shotgun sequence

⇒Summary: seq-len = 708 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 44-530 bp Zoom in on locus 1 x8 CRISPR array Location: 44-530 bp Num of repeats: 8 Spacers: s1-s7 CRISPR array Location: 44-530 bp Num of repeats: 8 Spacers: s1-s7 Sorry, your browser does not support inline SVG.

Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 44-530 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 11: FJVK01000063.1 Peptoclostridium difficile strain CD105KSE11 genome assembly, contig: {contig63}, whole genome shotgun sequence

⇒Summary: seq-len = 12625 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 2982-3336 bp Zoom in on locus 1 x6 CRISPR array Location: 2982-3336 bp Num of repeats: 6 Spacers: s1-s5 CRISPR array Location: 2982-3336 bp Num of repeats: 6 Spacers: s1-s5 Sorry, your browser does not support inline SVG.

Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 2982-3336 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 12: FJVK01000054.1 Peptoclostridium difficile strain CD105KSE11 genome assembly, contig: {contig54}, whole genome shotgun sequence

⇒Summary: seq-len = 188814 bp; # of CRISPR array = 2; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 42724-42884 bp 2 Locus 2: 181754-182438 bp Zoom in on locus 1 x3 Zoom in on locus 2 x11 CRISPR array Location: 42724-42884 bp Num of repeats: 3 Spacers: s1-s2 CRISPR array Location: 42724-42884 bp Num of repeats: 3 Spacers: s1-s2 CRISPR array Location: 181754-182438 bp Num of repeats: 11 Spacers: s3-s12 CRISPR array Location: 181754-182438 bp Num of repeats: 11 Spacers: s3-s12 Sorry, your browser does not support inline SVG.

Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 42724-42884 bp]: array | spacers
           [Locus range 181754-182438 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 13: FJVK01000084.1 Peptoclostridium difficile strain CD105KSE11 genome assembly, contig: {contig84}, whole genome shotgun sequence

⇒Summary: seq-len = 40721 bp; # of CRISPR array = 0; # of cas gene = 5  (type I) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 33682-40180 bp Zoom in on locus 1 Gene: cd09641:cas3HD Type: Type-I Location: 33682-36090 bp Gene: cd09693:cas5 Type: Type-I Location: 36117-36914 bp Gene: cd09687:cas7 Type: Subtype-I-B Location: 36930-37943 bp Gene: pfam09706:cas8b2 Type: Subtype-I-B Location: 37963-39438 bp Gene: pfam01881:cas6 Type: other Location: 39443-40180 bp Sorry, your browser does not support inline SVG.

Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 14: FJVK01000102.1 Peptoclostridium difficile strain CD105KSE11 genome assembly, contig: {contig102}, whole genome shotgun sequence

⇒Summary: seq-len = 440 bp; # of CRISPR array = 0; # of cas gene = 1  NA .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 3-437 bp Zoom in on locus 1 Gene: cd09693:cas5 Type: Type-I Location: 3-437 bp Sorry, your browser does not support inline SVG.

Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)