CRISPRone

CRISPRone report for GCA_900095895.1_ASM90009589v1

♦ Seq 1: FRES01000002.1 Peptoclostridium difficile M120 genome assembly, contig: 2, whole genome shotgun sequence

⇒Summary: seq-len = 4069609 bp; # of CRISPR array = 6; # of cas gene = 28  (type I, III) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 1365122-1365749 bp 2 Locus 2: 1848155-1849304 bp 3 Locus 3: 2174839-2187149 bp 4 Locus 4: 2242562-2243375 bp 5 Locus 5: 2351364-2362951 bp 6 Locus 6: 2650603-2661556 bp 7 Locus 7: 2714159-2722486 bp 8 Locus 8: 3288552-3300250 bp Zoom in on locus 1 x10 Zoom in on locus 2 x18 Zoom in on locus 3 x44 Zoom in on locus 4 x13 Zoom in on locus 5 x39 Zoom in on locus 6 Zoom in on locus 7 Zoom in on locus 8 x33 CRISPR array Location: 1365122-1365749 bp Num of repeats: 10 Spacers: s1-s9 CRISPR array Location: 1365122-1365749 bp Num of repeats: 10 Spacers: s1-s9 CRISPR array Location: 1848155-1849304 bp Num of repeats: 18 Spacers: s10-s26 CRISPR array Location: 1848155-1849304 bp Num of repeats: 18 Spacers: s10-s26 CRISPR array Location: 2174839-2177703 bp Num of repeats: 44 Spacers: s27-s69 CRISPR array Location: 2174839-2177703 bp Num of repeats: 44 Spacers: s27-s69 Gene: cd09718:cas1 Type: universal Location: 2185105-2186760 bp Gene: COG0640:csa3 Type: Subtype-I-A Location: 2186772-2187149 bp CRISPR array Location: 2242562-2243375 bp Num of repeats: 13 Spacers: s70-s81 CRISPR array Location: 2242562-2243375 bp Num of repeats: 13 Spacers: s70-s81 Gene: cd09725:cas2 Type: universal Location: 2351364-2351654 bp Gene: cd09722:cas1 Type: universal Location: 2351865-2352872 bp Gene: pfam01930:cas4 Type: Type-I Location: 2352898-2353392 bp CRISPR array Location: 2353477-2356009 bp Num of repeats: 39 Spacers: s82-s119 CRISPR array Location: 2353477-2356009 bp Num of repeats: 39 Spacers: s82-s119 Gene: unk Type: unknown Location: 2354100-2354228 bp Gene: cd09641:cas3HD Type: Type-I Location: 2356199-2358757 bp Gene: cd09693:cas5 Type: Type-I Location: 2358781-2359521 bp Gene: pfam05107:cas7b Type: Type-I Location: 2359523-2360512 bp Gene: mkCas0106:cas8b1 Type: Subtype-I-B Location: 2360505-2362244 bp Gene: cd09652:cas6 Type: other Location: 2362256-2362951 bp Gene: cd06127:DEDDh Type: Type-I Location: 2650603-2651109 bp Gene: unk Type: unknown Location: 2651268-2651936 bp Gene: unk Type: unknown Location: 2652349-2652855 bp Gene: cd06127:DEDDh Type: Type-I Location: 2653219-2654256 bp Gene: COG0640:csa3 Type: Subtype-I-A Location: 2661071-2661556 bp Gene: cd09641:cas3HD Type: Type-I Location: 2714159-2716567 bp Gene: cd09693:cas5 Type: Type-I Location: 2716594-2717391 bp Gene: cd09687:cas7 Type: Subtype-I-B Location: 2717407-2718420 bp Gene: pfam09706:cas8b2 Type: Subtype-I-B Location: 2718439-2719905 bp Gene: pfam01881:cas6 Type: other Location: 2719910-2720647 bp Gene: unk Type: unknown Location: 2720748-2720924 bp Gene: mkCas0101:csm2gr11 Type: Subtype-III-D Location: 2721377-2722486 bp CRISPR array Location: 3288552-3290673 bp Num of repeats: 33 Spacers: s120-s151 CRISPR array Location: 3288552-3290673 bp Num of repeats: 33 Spacers: s120-s151 Gene: cd09725:cas2 Type: universal Location: 3290857-3291123 bp Gene: cd09722:cas1 Type: universal Location: 3291126-3292106 bp Gene: pfam01930:cas4 Type: Type-I Location: 3292109-3292627 bp Gene: COG1203:cas3 Type: Type-I Location: 3292675-3294996 bp Gene: cd09693:cas5 Type: Type-I Location: 3295007-3295708 bp Gene: cd09687:cas7 Type: Subtype-I-B Location: 3295710-3296624 bp Gene: cd09665:cas8b2 Type: Subtype-I-B Location: 3296626-3298476 bp Gene: pfam01881:cas6 Type: other Location: 3298482-3299219 bp Gene: pfam13280:WYL Type: other Location: 3299297-3300250 bp Sorry, your browser does not support inline SVG.

Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 1365122-1365749 bp]: array | spacers
           [Locus range 1848155-1849304 bp]: array | spacers
           [Locus range 2174839-2177703 bp]: array | spacers
           [Locus range 2242562-2243375 bp]: array | spacers
           [Locus range 2353477-2356009 bp]: array | spacers
           [Locus range 3288552-3290673 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)