CRISPRone

CRISPRone report for GCA_900095905.1_ASM90009590v1

♦ Seq 1: FRET01000001.1 Clostridioides difficile strain CD105HS27 genome assembly, contig: 1, whole genome shotgun sequence

⇒Summary: seq-len = 3462540 bp; # of CRISPR array = 6; # of cas gene = 27  (type I) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 12557-19045 bp 2 Locus 2: 71648-82601 bp 3 Locus 3: 370253-381906 bp 4 Locus 4: 489894-490708 bp 5 Locus 5: 528210-540521 bp 6 Locus 6: 970364-971512 bp 7 Locus 7: 1471955-1472581 bp 8 Locus 8: 2950882-2962580 bp Zoom in on locus 1 Zoom in on locus 2 Zoom in on locus 3 x40 Zoom in on locus 4 x13 Zoom in on locus 5 x44 Zoom in on locus 6 x18 Zoom in on locus 7 x10 Zoom in on locus 8 x33 Gene: pfam01881:cas6 Type: other Location: 12557-13294 bp Gene: pfam09706:cas8b2 Type: Subtype-I-B Location: 13299-14765 bp Gene: cd09687:cas7 Type: Subtype-I-B Location: 14784-15797 bp Gene: cd09693:cas5 Type: Type-I Location: 15813-16610 bp Gene: cd09641:cas3HD Type: Type-I Location: 16637-19045 bp Gene: COG0640:csa3 Type: Subtype-I-A Location: 71648-72133 bp Gene: cd06127:DEDDh Type: Type-I Location: 78948-79985 bp Gene: unk Type: unknown Location: 80349-80855 bp Gene: unk Type: unknown Location: 81268-81936 bp Gene: cd06127:DEDDh Type: Type-I Location: 82095-82601 bp Gene: cd09652:cas6 Type: other Location: 370253-370948 bp Gene: mkCas0106:cas8b1 Type: Subtype-I-B Location: 370960-372699 bp Gene: pfam05107:cas7b Type: Type-I Location: 372692-373681 bp Gene: cd09693:cas5 Type: Type-I Location: 373683-374423 bp Gene: cd09641:cas3HD Type: Type-I Location: 374447-377005 bp CRISPR array Location: 377195-379794 bp Num of repeats: 40 Spacers: s1-s39 CRISPR array Location: 377195-379794 bp Num of repeats: 40 Spacers: s1-s39 Gene: unk Type: unknown Location: 379042-379170 bp Gene: pfam01930:cas4 Type: Type-I Location: 379878-380372 bp Gene: cd09722:cas1 Type: universal Location: 380407-381405 bp Gene: cd09725:cas2 Type: universal Location: 381616-381906 bp CRISPR array Location: 489894-490708 bp Num of repeats: 13 Spacers: s40-s51 CRISPR array Location: 489894-490708 bp Num of repeats: 13 Spacers: s40-s51 Gene: COG0640:csa3 Type: Subtype-I-A Location: 528210-528587 bp Gene: cd09718:cas1 Type: universal Location: 528599-530254 bp CRISPR array Location: 537656-540521 bp Num of repeats: 44 Spacers: s52-s94 CRISPR array Location: 537656-540521 bp Num of repeats: 44 Spacers: s52-s94 CRISPR array Location: 970364-971512 bp Num of repeats: 18 Spacers: s95-s111 CRISPR array Location: 970364-971512 bp Num of repeats: 18 Spacers: s95-s111 CRISPR array Location: 1471955-1472581 bp Num of repeats: 10 Spacers: s112-s120 CRISPR array Location: 1471955-1472581 bp Num of repeats: 10 Spacers: s112-s120 CRISPR array Location: 2950882-2953003 bp Num of repeats: 33 Spacers: s121-s152 CRISPR array Location: 2950882-2953003 bp Num of repeats: 33 Spacers: s121-s152 Gene: cd09725:cas2 Type: universal Location: 2953187-2953453 bp Gene: cd09722:cas1 Type: universal Location: 2953456-2954436 bp Gene: pfam01930:cas4 Type: Type-I Location: 2954439-2954957 bp Gene: COG1203:cas3 Type: Type-I Location: 2955005-2957326 bp Gene: cd09693:cas5 Type: Type-I Location: 2957337-2958038 bp Gene: cd09687:cas7 Type: Subtype-I-B Location: 2958040-2958954 bp Gene: cd09665:cas8b2 Type: Subtype-I-B Location: 2958956-2960806 bp Gene: pfam01881:cas6 Type: other Location: 2960812-2961606 bp Gene: pfam13280:WYL Type: other Location: 2961627-2962580 bp Sorry, your browser does not support inline SVG.

Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 377195-379794 bp]: array | spacers
           [Locus range 489894-490708 bp]: array | spacers
           [Locus range 537656-540521 bp]: array | spacers
           [Locus range 970364-971512 bp]: array | spacers
           [Locus range 1471955-1472581 bp]: array | spacers
           [Locus range 2950882-2953003 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)