CRISPRone

CRISPRone report for GCA_900095915.1_ASM90009591v1

♦ Seq 1: FMKU01000002.1 Clostridioides difficile isolate CD105HS37 genome assembly, contig: contig000002, whole genome shotgun sequence

⇒Summary: seq-len = 489512 bp; # of CRISPR array = 2; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 189616-189909 bp 2 Locus 2: 398051-398472 bp Zoom in on locus 1 x5 Zoom in on locus 2 x7 CRISPR array Location: 189616-189909 bp Num of repeats: 5 Spacers: s1-s4 CRISPR array Location: 189616-189909 bp Num of repeats: 5 Spacers: s1-s4 CRISPR array Location: 398051-398472 bp Num of repeats: 7 Spacers: s5-s10 CRISPR array Location: 398051-398472 bp Num of repeats: 7 Spacers: s5-s10 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 189616-189909 bp]: array | spacers
           [Locus range 398051-398472 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 2: FMKU01000013.1 Clostridioides difficile isolate CD105HS37 genome assembly, contig: contig000013, whole genome shotgun sequence

⇒Summary: seq-len = 101360 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 19292-19519 bp Zoom in on locus 1 x4 CRISPR array Location: 19292-19519 bp Num of repeats: 4 Spacers: s1-s3 CRISPR array Location: 19292-19519 bp Num of repeats: 4 Spacers: s1-s3 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 19292-19519 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 3: FMKU01000005.1 Clostridioides difficile isolate CD105HS37 genome assembly, contig: contig000005, whole genome shotgun sequence

⇒Summary: seq-len = 354338 bp; # of CRISPR array = 1; # of cas gene = 8  (type I) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 138783-150839 bp Zoom in on locus 1 x46 Gene: cd09652:cas6 Type: other Location: 138783-139478 bp Gene: mkCas0106:cas8b1 Type: Subtype-I-B Location: 139490-141229 bp Gene: pfam05107:cas7b Type: Type-I Location: 141222-142211 bp Gene: cd09693:cas5 Type: Type-I Location: 142213-142953 bp Gene: cd09641:cas3HD Type: Type-I Location: 142977-145535 bp CRISPR array Location: 145725-148727 bp Num of repeats: 46 Spacers: s1-s45 CRISPR array Location: 145725-148727 bp Num of repeats: 46 Spacers: s1-s45 Gene: pfam01930:cas4 Type: Type-I Location: 148811-149305 bp Gene: cd09722:cas1 Type: universal Location: 149331-150338 bp Gene: cd09725:cas2 Type: universal Location: 150549-150839 bp Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 145725-148727 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 4: FMKU01000022.1 Clostridioides difficile isolate CD105HS37 genome assembly, contig: contig000022, whole genome shotgun sequence

⇒Summary: seq-len = 16104 bp; # of CRISPR array = 2; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 4416-7833 bp Zoom in on locus 1 x5 x13 CRISPR array Location: 4416-4707 bp Num of repeats: 5 Spacers: s1-s4 CRISPR array Location: 4416-4707 bp Num of repeats: 5 Spacers: s1-s4 CRISPR array Location: 7010-7833 bp Num of repeats: 13 Spacers: s5-s16 CRISPR array Location: 7010-7833 bp Num of repeats: 13 Spacers: s5-s16 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 4416-4707 bp]: array | spacers
           [Locus range 7010-7833 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 5: FMKU01000004.1 Clostridioides difficile isolate CD105HS37 genome assembly, contig: contig000004, whole genome shotgun sequence

⇒Summary: seq-len = 362429 bp; # of CRISPR array = 2; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 5822-5984 bp 2 Locus 2: 323857-324217 bp Zoom in on locus 1 x3 Zoom in on locus 2 x6 CRISPR array Location: 5822-5984 bp Num of repeats: 3 Spacers: s1-s2 CRISPR array Location: 5822-5984 bp Num of repeats: 3 Spacers: s1-s2 CRISPR array Location: 323857-324217 bp Num of repeats: 6 Spacers: s3-s7 CRISPR array Location: 323857-324217 bp Num of repeats: 6 Spacers: s3-s7 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 5822-5984 bp]: array | spacers
           [Locus range 323857-324217 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 6: FMKU01000001.1 Clostridioides difficile isolate CD105HS37 genome assembly, contig: contig000001, whole genome shotgun sequence

⇒Summary: seq-len = 543272 bp; # of CRISPR array = 2; # of cas gene = 6  (type I, III) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 247984-248542 bp 2 Locus 2: 321789-329654 bp 3 Locus 3: 491622-492373 bp Zoom in on locus 1 x9 Zoom in on locus 2 Zoom in on locus 3 x12 CRISPR array Location: 247984-248542 bp Num of repeats: 9 Spacers: s1-s8 CRISPR array Location: 247984-248542 bp Num of repeats: 9 Spacers: s1-s8 Gene: mkCas0101:csm2gr11 Type: Subtype-III-D Location: 321789-322898 bp Gene: pfam01881:cas6 Type: other Location: 323156-323893 bp Gene: pfam09706:cas8b2 Type: Subtype-I-B Location: 323898-325373 bp Gene: cd09687:cas7 Type: Subtype-I-B Location: 325393-326406 bp Gene: cd09693:cas5 Type: Type-I Location: 326422-327219 bp Gene: cd09641:cas3HD Type: Type-I Location: 327246-329654 bp CRISPR array Location: 491622-492373 bp Num of repeats: 12 Spacers: s9-s19 CRISPR array Location: 491622-492373 bp Num of repeats: 12 Spacers: s9-s19 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 247984-248542 bp]: array | spacers
           [Locus range 491622-492373 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)