CRISPRone

CRISPRone report for GCA_900095925.1_ASM90009592v1

♦ Seq 1: FMLY01000030.1 Clostridioides difficile isolate CD105HS10 genome assembly, contig: contig000030, whole genome shotgun sequence

⇒Summary: seq-len = 2049 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 1504-2061 bp Zoom in on locus 1 x9 CRISPR array Location: 1504-2061 bp Num of repeats: 9 Spacers: s1-s8 CRISPR array Location: 1504-2061 bp Num of repeats: 9 Spacers: s1-s8 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 1504-2061 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 2: FMLY01000002.1 Clostridioides difficile isolate CD105HS10 genome assembly, contig: contig000002, whole genome shotgun sequence

⇒Summary: seq-len = 630283 bp; # of CRISPR array = 2; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 253296-253586 bp 2 Locus 2: 626505-627252 bp Zoom in on locus 1 x5 Zoom in on locus 2 x12 CRISPR array Location: 253296-253586 bp Num of repeats: 5 Spacers: s1-s4 CRISPR array Location: 253296-253586 bp Num of repeats: 5 Spacers: s1-s4 CRISPR array Location: 626505-627252 bp Num of repeats: 12 Spacers: s5-s15 CRISPR array Location: 626505-627252 bp Num of repeats: 12 Spacers: s5-s15 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 253296-253586 bp]: array | spacers
           [Locus range 626505-627252 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 3: FMLY01000006.1 Clostridioides difficile isolate CD105HS10 genome assembly, contig: contig000006, whole genome shotgun sequence

⇒Summary: seq-len = 297480 bp; # of CRISPR array = 3; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 60127-61461 bp 2 Locus 2: 196566-196855 bp 3 Locus 3: 277467-279275 bp Zoom in on locus 1 x21 Zoom in on locus 2 x5 Zoom in on locus 3 x28 CRISPR array Location: 60127-61461 bp Num of repeats: 21 Spacers: s1-s20 CRISPR array Location: 60127-61461 bp Num of repeats: 21 Spacers: s1-s20 CRISPR array Location: 196566-196855 bp Num of repeats: 5 Spacers: s21-s24 CRISPR array Location: 196566-196855 bp Num of repeats: 5 Spacers: s21-s24 CRISPR array Location: 277467-279275 bp Num of repeats: 28 Spacers: s25-s51 CRISPR array Location: 277467-279275 bp Num of repeats: 28 Spacers: s25-s51 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 60127-61461 bp]: array | spacers
           [Locus range 196566-196855 bp]: array | spacers
           [Locus range 277467-279275 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 4: FMLY01000003.1 Clostridioides difficile isolate CD105HS10 genome assembly, contig: contig000003, whole genome shotgun sequence

⇒Summary: seq-len = 476326 bp; # of CRISPR array = 1; # of cas gene = 9  (type I) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 191198-201094 bp Zoom in on locus 1 x6 Gene: pfam13280:WYL Type: other Location: 191198-192085 bp Gene: pfam01881:cas6 Type: other Location: 192163-192900 bp Gene: cd09665:cas8b2 Type: Subtype-I-B Location: 192906-194783 bp Gene: cd09687:cas7 Type: Subtype-I-B Location: 194785-195699 bp Gene: cd09658:cas5 Type: Subtype-I-B Location: 195701-196402 bp Gene: cd09641:cas3HD Type: Type-I Location: 196413-198734 bp Gene: pfam01930:cas4 Type: Type-I Location: 198749-199300 bp Gene: cd09722:cas1 Type: universal Location: 199303-200283 bp Gene: cd09725:cas2 Type: universal Location: 200286-200552 bp CRISPR array Location: 200736-201094 bp Num of repeats: 6 Spacers: s1-s5 CRISPR array Location: 200736-201094 bp Num of repeats: 6 Spacers: s1-s5 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 200736-201094 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 5: FMLY01000007.1 Clostridioides difficile isolate CD105HS10 genome assembly, contig: contig000007, whole genome shotgun sequence

⇒Summary: seq-len = 211061 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 119318-120142 bp Zoom in on locus 1 x13 CRISPR array Location: 119318-120142 bp Num of repeats: 13 Spacers: s1-s12 CRISPR array Location: 119318-120142 bp Num of repeats: 13 Spacers: s1-s12 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 119318-120142 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 6: FMLY01000014.1 Clostridioides difficile isolate CD105HS10 genome assembly, contig: contig000014, whole genome shotgun sequence

⇒Summary: seq-len = 62293 bp; # of CRISPR array = 2; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 0-2537 bp Zoom in on locus 1 x3 x11 CRISPR array Location: 0-149 bp Num of repeats: 3 Spacers: s1-s2 CRISPR array Location: 0-149 bp Num of repeats: 3 Spacers: s1-s2 CRISPR array Location: 1851-2537 bp Num of repeats: 11 Spacers: s3-s12 CRISPR array Location: 1851-2537 bp Num of repeats: 11 Spacers: s3-s12 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 0-149 bp]: array | spacers
           [Locus range 1851-2537 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 7: FMLY01000012.1 Clostridioides difficile isolate CD105HS10 genome assembly, contig: contig000012, whole genome shotgun sequence

⇒Summary: seq-len = 86347 bp; # of CRISPR array = 2; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 83609-86349 bp Zoom in on locus 1 x14 x3 CRISPR array Location: 83609-84495 bp Num of repeats: 14 Spacers: s1-s13 CRISPR array Location: 83609-84495 bp Num of repeats: 14 Spacers: s1-s13 CRISPR array Location: 86188-86349 bp Num of repeats: 3 Spacers: s14-s15 CRISPR array Location: 86188-86349 bp Num of repeats: 3 Spacers: s14-s15 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 83609-84495 bp]: array | spacers
           [Locus range 86188-86349 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 8: FMLY01000001.1 Clostridioides difficile isolate CD105HS10 genome assembly, contig: contig000001, whole genome shotgun sequence

⇒Summary: seq-len = 642594 bp; # of CRISPR array = 1; # of cas gene = 6  (type I, III) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 160456-168802 bp 2 Locus 2: 242085-242580 bp Zoom in on locus 1 Zoom in on locus 2 x8 Gene: cd09641:cas3HD Type: Type-I Location: 160456-162864 bp Gene: cd09693:cas5 Type: Type-I Location: 162891-163688 bp Gene: cd09687:cas7 Type: Subtype-I-B Location: 163704-164720 bp Gene: pfam09706:cas8b2 Type: Subtype-I-B Location: 164740-166215 bp Gene: pfam01881:cas6 Type: other Location: 166220-166957 bp Gene: unk Type: unknown Location: 167058-167234 bp Gene: mkCas0101:csm2gr11 Type: Subtype-III-D Location: 167693-168802 bp CRISPR array Location: 242085-242580 bp Num of repeats: 8 Spacers: s1-s7 CRISPR array Location: 242085-242580 bp Num of repeats: 8 Spacers: s1-s7 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 242085-242580 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)