CRISPRone

CRISPRone report for GCA_900095935.1_ASM90009593v1

♦ Seq 1: FMLG01000003.1 Clostridioides difficile isolate CD105HS23 genome assembly, contig: contig000003, whole genome shotgun sequence

⇒Summary: seq-len = 423803 bp; # of CRISPR array = 1; # of cas gene = 9  (type I) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 248041-258154 bp Zoom in on locus 1 x9 CRISPR array Location: 248041-248589 bp Num of repeats: 9 Spacers: s1-s8 CRISPR array Location: 248041-248589 bp Num of repeats: 9 Spacers: s1-s8 Gene: cd09725:cas2 Type: universal Location: 248773-249039 bp Gene: cd09722:cas1 Type: universal Location: 249042-250022 bp Gene: pfam01930:cas4 Type: Type-I Location: 250106-250543 bp Gene: COG1203:cas3 Type: Type-I Location: 250591-252912 bp Gene: cd09658:cas5 Type: Subtype-I-B Location: 252923-253624 bp Gene: cd09687:cas7 Type: Subtype-I-B Location: 253626-254540 bp Gene: cd09665:cas8b2 Type: Subtype-I-B Location: 254542-256419 bp Gene: pfam01881:cas6 Type: other Location: 256425-257219 bp Gene: pfam13280:WYL Type: other Location: 257240-258154 bp Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 248041-248589 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 2: FMLG01000008.1 Clostridioides difficile isolate CD105HS23 genome assembly, contig: contig000008, whole genome shotgun sequence

⇒Summary: seq-len = 206456 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 114562-115511 bp Zoom in on locus 1 x15 CRISPR array Location: 114562-115511 bp Num of repeats: 15 Spacers: s1-s14 CRISPR array Location: 114562-115511 bp Num of repeats: 15 Spacers: s1-s14 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 114562-115511 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 3: FMLG01000007.1 Clostridioides difficile isolate CD105HS23 genome assembly, contig: contig000007, whole genome shotgun sequence

⇒Summary: seq-len = 250208 bp; # of CRISPR array = 2; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 18311-18803 bp 2 Locus 2: 192378-193591 bp Zoom in on locus 1 x8 Zoom in on locus 2 x19 CRISPR array Location: 18311-18803 bp Num of repeats: 8 Spacers: s1-s7 CRISPR array Location: 18311-18803 bp Num of repeats: 8 Spacers: s1-s7 CRISPR array Location: 192378-193591 bp Num of repeats: 19 Spacers: s8-s25 CRISPR array Location: 192378-193591 bp Num of repeats: 19 Spacers: s8-s25 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 18311-18803 bp]: array | spacers
           [Locus range 192378-193591 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 4: FMLG01000002.1 Clostridioides difficile isolate CD105HS23 genome assembly, contig: contig000002, whole genome shotgun sequence

⇒Summary: seq-len = 588222 bp; # of CRISPR array = 2; # of cas gene = 6  (type I, III) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 96066-96487 bp 2 Locus 2: 261918-269783 bp 3 Locus 3: 343066-343561 bp Zoom in on locus 1 x7 Zoom in on locus 2 Zoom in on locus 3 x8 CRISPR array Location: 96066-96487 bp Num of repeats: 7 Spacers: s1-s6 CRISPR array Location: 96066-96487 bp Num of repeats: 7 Spacers: s1-s6 Gene: cd09641:cas3HD Type: Type-I Location: 261918-264326 bp Gene: cd09693:cas5 Type: Type-I Location: 264353-265150 bp Gene: cd09687:cas7 Type: Subtype-I-B Location: 265166-266179 bp Gene: pfam09706:cas8b2 Type: Subtype-I-B Location: 266199-267674 bp Gene: pfam01881:cas6 Type: other Location: 267679-268416 bp Gene: mkCas0101:csm2gr11 Type: Subtype-III-D Location: 268674-269783 bp CRISPR array Location: 343066-343561 bp Num of repeats: 8 Spacers: s7-s13 CRISPR array Location: 343066-343561 bp Num of repeats: 8 Spacers: s7-s13 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 96066-96487 bp]: array | spacers
           [Locus range 343066-343561 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)