CRISPRone

CRISPRone report for GCA_900095945.1_ASM90009594v1

♦ Seq 1: FMKT01000009.1 Clostridioides difficile isolate CD105HS28 genome assembly, contig: contig000009, whole genome shotgun sequence

⇒Summary: seq-len = 212941 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 121567-121994 bp Zoom in on locus 1 x7 CRISPR array Location: 121567-121994 bp Num of repeats: 7 Spacers: s1-s6 CRISPR array Location: 121567-121994 bp Num of repeats: 7 Spacers: s1-s6 Sorry, your browser does not support inline SVG.

Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 121567-121994 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 2: FMKT01000001.1 Clostridioides difficile isolate CD105HS28 genome assembly, contig: contig000001, whole genome shotgun sequence

⇒Summary: seq-len = 735454 bp; # of CRISPR array = 2; # of cas gene = 6  (type I, III) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 237965-238321 bp 2 Locus 2: 311587-319452 bp 3 Locus 3: 481454-482342 bp Zoom in on locus 1 x6 Zoom in on locus 2 Zoom in on locus 3 x14 CRISPR array Location: 237965-238321 bp Num of repeats: 6 Spacers: s1-s5 CRISPR array Location: 237965-238321 bp Num of repeats: 6 Spacers: s1-s5 Gene: mkCas0101:csm2gr11 Type: Subtype-III-D Location: 311587-312696 bp Gene: pfam01881:cas6 Type: other Location: 312954-313691 bp Gene: pfam09706:cas8b2 Type: Subtype-I-B Location: 313696-315171 bp Gene: cd09687:cas7 Type: Subtype-I-B Location: 315191-316204 bp Gene: cd09693:cas5 Type: Type-I Location: 316220-317017 bp Gene: cd09641:cas3HD Type: Type-I Location: 317044-319452 bp CRISPR array Location: 481454-482342 bp Num of repeats: 14 Spacers: s6-s18 CRISPR array Location: 481454-482342 bp Num of repeats: 14 Spacers: s6-s18 Sorry, your browser does not support inline SVG.

Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 237965-238321 bp]: array | spacers
           [Locus range 481454-482342 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 3: FMKT01000003.1 Clostridioides difficile isolate CD105HS28 genome assembly, contig: contig000003, whole genome shotgun sequence

⇒Summary: seq-len = 339644 bp; # of CRISPR array = 5; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 17704-18196 bp 2 Locus 2: 109104-114439 bp 3 Locus 3: 281594-283135 bp Zoom in on locus 1 x8 Zoom in on locus 2 x4 x13 x4 Zoom in on locus 3 x24 CRISPR array Location: 17704-18196 bp Num of repeats: 8 Spacers: s1-s7 CRISPR array Location: 17704-18196 bp Num of repeats: 8 Spacers: s1-s7 CRISPR array Location: 109104-109330 bp Num of repeats: 4 Spacers: s8-s10 CRISPR array Location: 109104-109330 bp Num of repeats: 4 Spacers: s8-s10 CRISPR array Location: 109932-110752 bp Num of repeats: 13 Spacers: s11-s22 CRISPR array Location: 109932-110752 bp Num of repeats: 13 Spacers: s11-s22 CRISPR array Location: 114214-114439 bp Num of repeats: 4 Spacers: s23-s25 CRISPR array Location: 114214-114439 bp Num of repeats: 4 Spacers: s23-s25 CRISPR array Location: 281594-283135 bp Num of repeats: 24 Spacers: s26-s48 CRISPR array Location: 281594-283135 bp Num of repeats: 24 Spacers: s26-s48 Sorry, your browser does not support inline SVG.

Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 17704-18196 bp]: array | spacers
           [Locus range 109104-109330 bp]: array | spacers
           [Locus range 109932-110752 bp]: array | spacers
           [Locus range 114214-114439 bp]: array | spacers
           [Locus range 281594-283135 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 4: FMKT01000018.1 Clostridioides difficile isolate CD105HS28 genome assembly, contig: contig000018, whole genome shotgun sequence

⇒Summary: seq-len = 60789 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 44891-46165 bp Zoom in on locus 1 x20 CRISPR array Location: 44891-46165 bp Num of repeats: 20 Spacers: s1-s19 CRISPR array Location: 44891-46165 bp Num of repeats: 20 Spacers: s1-s19 Sorry, your browser does not support inline SVG.

Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 44891-46165 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)