CRISPRone

CRISPRone report for GCA_900095955.1_ASM90009595v1

♦ Seq 1: FMKS01000020.1 Clostridioides difficile isolate CD105HS36 genome assembly, contig: contig000020, whole genome shotgun sequence

⇒Summary: seq-len = 68803 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 63641-64790 bp Zoom in on locus 1 x18 CRISPR array Location: 63641-64790 bp Num of repeats: 18 Spacers: s1-s17 CRISPR array Location: 63641-64790 bp Num of repeats: 18 Spacers: s1-s17 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 63641-64790 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 2: FMKS01000019.1 Clostridioides difficile isolate CD105HS36 genome assembly, contig: contig000019, whole genome shotgun sequence

⇒Summary: seq-len = 84908 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 65199-65689 bp Zoom in on locus 1 x8 CRISPR array Location: 65199-65689 bp Num of repeats: 8 Spacers: s1-s7 CRISPR array Location: 65199-65689 bp Num of repeats: 8 Spacers: s1-s7 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 65199-65689 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 3: FMKS01000007.1 Clostridioides difficile isolate CD105HS36 genome assembly, contig: contig000007, whole genome shotgun sequence

⇒Summary: seq-len = 203781 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 93357-93518 bp Zoom in on locus 1 x3 CRISPR array Location: 93357-93518 bp Num of repeats: 3 Spacers: s1-s2 CRISPR array Location: 93357-93518 bp Num of repeats: 3 Spacers: s1-s2 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 93357-93518 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 4: FMKS01000027.1 Clostridioides difficile isolate CD105HS36 genome assembly, contig: contig000027, whole genome shotgun sequence

⇒Summary: seq-len = 18902 bp; # of CRISPR array = 3; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 7085-12023 bp Zoom in on locus 1 x14 x4 x7 CRISPR array Location: 7085-7970 bp Num of repeats: 14 Spacers: s1-s13 CRISPR array Location: 7085-7970 bp Num of repeats: 14 Spacers: s1-s13 CRISPR array Location: 9772-9995 bp Num of repeats: 4 Spacers: s14-s16 CRISPR array Location: 9772-9995 bp Num of repeats: 4 Spacers: s14-s16 CRISPR array Location: 11600-12023 bp Num of repeats: 7 Spacers: s17-s22 CRISPR array Location: 11600-12023 bp Num of repeats: 7 Spacers: s17-s22 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 7085-7970 bp]: array | spacers
           [Locus range 9772-9995 bp]: array | spacers
           [Locus range 11600-12023 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 5: FMKS01000002.1 Clostridioides difficile isolate CD105HS36 genome assembly, contig: contig000002, whole genome shotgun sequence

⇒Summary: seq-len = 370720 bp; # of CRISPR array = 2; # of cas gene = 6  (type I, III) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 44385-44678 bp 2 Locus 2: 117960-126281 bp 3 Locus 3: 289571-290188 bp Zoom in on locus 1 x5 Zoom in on locus 2 Zoom in on locus 3 x10 CRISPR array Location: 44385-44678 bp Num of repeats: 5 Spacers: s1-s4 CRISPR array Location: 44385-44678 bp Num of repeats: 5 Spacers: s1-s4 Gene: mkCas0101:csm2gr11 Type: Subtype-III-D Location: 117960-119069 bp Gene: unk Type: unknown Location: 119503-119679 bp Gene: pfam01881:cas6 Type: other Location: 119780-120517 bp Gene: pfam09706:cas8b2 Type: Subtype-I-B Location: 120522-121997 bp Gene: cd09687:cas7 Type: Subtype-I-B Location: 122017-123033 bp Gene: cd09693:cas5 Type: Type-I Location: 123049-123846 bp Gene: cd09641:cas3HD Type: Type-I Location: 123873-126281 bp CRISPR array Location: 289571-290188 bp Num of repeats: 10 Spacers: s5-s13 CRISPR array Location: 289571-290188 bp Num of repeats: 10 Spacers: s5-s13 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 44385-44678 bp]: array | spacers
           [Locus range 289571-290188 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 6: FMKS01000005.1 Clostridioides difficile isolate CD105HS36 genome assembly, contig: contig000005, whole genome shotgun sequence

⇒Summary: seq-len = 225673 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 138431-139580 bp Zoom in on locus 1 x18 CRISPR array Location: 138431-139580 bp Num of repeats: 18 Spacers: s1-s17 CRISPR array Location: 138431-139580 bp Num of repeats: 18 Spacers: s1-s17 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 138431-139580 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 7: FMKS01000001.1 Clostridioides difficile isolate CD105HS36 genome assembly, contig: contig000001, whole genome shotgun sequence

⇒Summary: seq-len = 517066 bp; # of CRISPR array = 2; # of cas gene = 9  (type I) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 262327-273464 bp 2 Locus 2: 495834-495927 bp Zoom in on locus 1 x25 Zoom in on locus 2 x2 CRISPR array Location: 262327-263926 bp Num of repeats: 25 Spacers: s1-s24 CRISPR array Location: 262327-263926 bp Num of repeats: 25 Spacers: s1-s24 Gene: cd09725:cas2 Type: universal Location: 264110-264376 bp Gene: cd09722:cas1 Type: universal Location: 264379-265359 bp Gene: pfam01930:cas4 Type: Type-I Location: 265362-265880 bp Gene: COG1203:cas3 Type: Type-I Location: 265928-268249 bp Gene: cd09658:cas5 Type: Subtype-I-B Location: 268260-268961 bp Gene: cd09687:cas7 Type: Subtype-I-B Location: 268963-269877 bp Gene: cd09665:cas8b2 Type: Subtype-I-B Location: 269879-271729 bp Gene: pfam01881:cas6 Type: other Location: 271735-272529 bp Gene: pfam13280:WYL Type: other Location: 272550-273464 bp CRISPR array Location: 495834-495927 bp Num of repeats: 2 Spacers: s25-s25 CRISPR array Location: 495834-495927 bp Num of repeats: 2 Spacers: s25-s25 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 262327-263926 bp]: array | spacers
           [Locus range 495834-495927 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 8: FMKS01000006.1 Clostridioides difficile isolate CD105HS36 genome assembly, contig: contig000006, whole genome shotgun sequence

⇒Summary: seq-len = 216661 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 91596-92088 bp Zoom in on locus 1 x8 CRISPR array Location: 91596-92088 bp Num of repeats: 8 Spacers: s1-s7 CRISPR array Location: 91596-92088 bp Num of repeats: 8 Spacers: s1-s7 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 91596-92088 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 9: FMKS01000024.1 Clostridioides difficile isolate CD105HS36 genome assembly, contig: contig000024, whole genome shotgun sequence

⇒Summary: seq-len = 32416 bp; # of CRISPR array = 2; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 7537-9643 bp Zoom in on locus 1 x3 x4 CRISPR array Location: 7537-7697 bp Num of repeats: 3 Spacers: s1-s2 CRISPR array Location: 7537-7697 bp Num of repeats: 3 Spacers: s1-s2 CRISPR array Location: 9419-9643 bp Num of repeats: 4 Spacers: s3-s5 CRISPR array Location: 9419-9643 bp Num of repeats: 4 Spacers: s3-s5 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 7537-7697 bp]: array | spacers
           [Locus range 9419-9643 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)