CRISPRone

CRISPRone report for GCA_900095965.1_ASM90009596v1

♦ Seq 1: FMLC01000002.1 Clostridioides difficile isolate CD105HS27_Illumina genome assembly, contig: contig000002, whole genome shotgun sequence

⇒Summary: seq-len = 295295 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 104083-104709 bp Zoom in on locus 1 x10 CRISPR array Location: 104083-104709 bp Num of repeats: 10 Spacers: s1-s9 CRISPR array Location: 104083-104709 bp Num of repeats: 10 Spacers: s1-s9 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 104083-104709 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 2: FMLC01000010.1 Clostridioides difficile isolate CD105HS27_Illumina genome assembly, contig: contig000010, whole genome shotgun sequence

⇒Summary: seq-len = 141055 bp; # of CRISPR array = 1; # of cas gene = 8  (type I) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 61745-73398 bp Zoom in on locus 1 x40 Gene: cd09725:cas2 Type: universal Location: 61745-62035 bp Gene: cd09722:cas1 Type: universal Location: 62246-63253 bp Gene: pfam01930:cas4 Type: Type-I Location: 63279-63773 bp CRISPR array Location: 63858-66456 bp Num of repeats: 40 Spacers: s1-s39 CRISPR array Location: 63858-66456 bp Num of repeats: 40 Spacers: s1-s39 Gene: unk Type: unknown Location: 64481-64609 bp Gene: cd09641:cas3HD Type: Type-I Location: 66646-69204 bp Gene: cd09693:cas5 Type: Type-I Location: 69228-69968 bp Gene: pfam05107:cas7b Type: Type-I Location: 69970-70959 bp Gene: mkCas0106:cas8b1 Type: Subtype-I-B Location: 70952-72691 bp Gene: cd09652:cas6 Type: other Location: 72703-73398 bp Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 63858-66456 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 3: FMLC01000022.1 Clostridioides difficile isolate CD105HS27_Illumina genome assembly, contig: contig000022, whole genome shotgun sequence

⇒Summary: seq-len = 76044 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 73295-74443 bp Zoom in on locus 1 x18 CRISPR array Location: 73295-74443 bp Num of repeats: 18 Spacers: s1-s17 CRISPR array Location: 73295-74443 bp Num of repeats: 18 Spacers: s1-s17 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 73295-74443 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 4: FMLC01000007.1 Clostridioides difficile isolate CD105HS27_Illumina genome assembly, contig: contig000007, whole genome shotgun sequence

⇒Summary: seq-len = 147307 bp; # of CRISPR array = 1; # of cas gene = 9  (type I) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 9816-21515 bp Zoom in on locus 1 x33 Gene: pfam13280:WYL Type: other Location: 9816-10769 bp Gene: pfam01881:cas6 Type: other Location: 10847-11584 bp Gene: cd09665:cas8b2 Type: Subtype-I-B Location: 11590-13440 bp Gene: cd09687:cas7 Type: Subtype-I-B Location: 13442-14356 bp Gene: cd09693:cas5 Type: Type-I Location: 14358-15059 bp Gene: COG1203:cas3 Type: Type-I Location: 15070-17391 bp Gene: pfam01930:cas4 Type: Type-I Location: 17406-17957 bp Gene: cd09722:cas1 Type: universal Location: 17960-18940 bp Gene: cd09725:cas2 Type: universal Location: 18943-19209 bp CRISPR array Location: 19393-21515 bp Num of repeats: 33 Spacers: s1-s32 CRISPR array Location: 19393-21515 bp Num of repeats: 33 Spacers: s1-s32 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 19393-21515 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 5: FMLC01000004.1 Clostridioides difficile isolate CD105HS27_Illumina genome assembly, contig: contig000004, whole genome shotgun sequence

⇒Summary: seq-len = 168975 bp; # of CRISPR array = 0; # of cas gene = 8  (type I) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 98243-109196 bp 2 Locus 2: 161799-168287 bp Zoom in on locus 1 Zoom in on locus 2 Gene: cd06127:DEDDh Type: Type-I Location: 98243-98749 bp Gene: unk Type: unknown Location: 98908-99576 bp Gene: unk Type: unknown Location: 99989-100495 bp Gene: cd06127:DEDDh Type: Type-I Location: 100859-101896 bp Gene: COG0640:csa3 Type: Subtype-I-A Location: 108711-109196 bp Gene: cd09641:cas3HD Type: Type-I Location: 161799-164207 bp Gene: cd09693:cas5 Type: Type-I Location: 164234-165031 bp Gene: cd09687:cas7 Type: Subtype-I-B Location: 165047-166060 bp Gene: pfam09706:cas8b2 Type: Subtype-I-B Location: 166079-167545 bp Gene: pfam01881:cas6 Type: other Location: 167550-168287 bp Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 6: FMLC01000001.1 Clostridioides difficile isolate CD105HS27_Illumina genome assembly, contig: contig000001, whole genome shotgun sequence

⇒Summary: seq-len = 435316 bp; # of CRISPR array = 2; # of cas gene = 2  (type I) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 331644-343954 bp 2 Locus 2: 381457-382270 bp Zoom in on locus 1 x44 Zoom in on locus 2 x13 CRISPR array Location: 331644-334508 bp Num of repeats: 44 Spacers: s1-s43 CRISPR array Location: 331644-334508 bp Num of repeats: 44 Spacers: s1-s43 Gene: cd09718:cas1 Type: universal Location: 341910-343565 bp Gene: COG0640:csa3 Type: Subtype-I-A Location: 343577-343954 bp CRISPR array Location: 381457-382270 bp Num of repeats: 13 Spacers: s44-s55 CRISPR array Location: 381457-382270 bp Num of repeats: 13 Spacers: s44-s55 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 331644-334508 bp]: array | spacers
           [Locus range 381457-382270 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)