CRISPRone

CRISPRone report for GCA_900095975.1_ASM90009597v1

♦ Seq 1: FMKW01000003.1 Clostridioides difficile isolate CD105HS41 genome assembly, contig: contig000003, whole genome shotgun sequence

⇒Summary: seq-len = 700977 bp; # of CRISPR array = 5; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 189536-189829 bp 2 Locus 2: 397971-398392 bp 3 Locus 3: 508686-508913 bp 4 Locus 4: 598661-602078 bp Zoom in on locus 1 x5 Zoom in on locus 2 x7 Zoom in on locus 3 x4 Zoom in on locus 4 x5 x13 CRISPR array Location: 189536-189829 bp Num of repeats: 5 Spacers: s1-s4 CRISPR array Location: 189536-189829 bp Num of repeats: 5 Spacers: s1-s4 CRISPR array Location: 397971-398392 bp Num of repeats: 7 Spacers: s5-s10 CRISPR array Location: 397971-398392 bp Num of repeats: 7 Spacers: s5-s10 CRISPR array Location: 508686-508913 bp Num of repeats: 4 Spacers: s11-s13 CRISPR array Location: 508686-508913 bp Num of repeats: 4 Spacers: s11-s13 CRISPR array Location: 598661-598952 bp Num of repeats: 5 Spacers: s14-s17 CRISPR array Location: 598661-598952 bp Num of repeats: 5 Spacers: s14-s17 CRISPR array Location: 601255-602078 bp Num of repeats: 13 Spacers: s18-s29 CRISPR array Location: 601255-602078 bp Num of repeats: 13 Spacers: s18-s29 Sorry, your browser does not support inline SVG.

Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 189536-189829 bp]: array | spacers
           [Locus range 397971-398392 bp]: array | spacers
           [Locus range 508686-508913 bp]: array | spacers
           [Locus range 598661-598952 bp]: array | spacers
           [Locus range 601255-602078 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 2: FMKW01000001.1 Clostridioides difficile isolate CD105HS41 genome assembly, contig: contig000001, whole genome shotgun sequence

⇒Summary: seq-len = 1346399 bp; # of CRISPR array = 5; # of cas gene = 14  (type I, III) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 269511-270069 bp 2 Locus 2: 343386-351251 bp 3 Locus 3: 513236-513724 bp 4 Locus 4: 703226-715282 bp 5 Locus 5: 870737-870899 bp 6 Locus 6: 1179895-1180255 bp Zoom in on locus 1 x9 Zoom in on locus 2 Zoom in on locus 3 x8 Zoom in on locus 4 x46 Zoom in on locus 5 x3 Zoom in on locus 6 x6 CRISPR array Location: 269511-270069 bp Num of repeats: 9 Spacers: s1-s8 CRISPR array Location: 269511-270069 bp Num of repeats: 9 Spacers: s1-s8 Gene: mkCas0101:csm2gr11 Type: Subtype-III-D Location: 343386-344495 bp Gene: pfam01881:cas6 Type: other Location: 344753-345490 bp Gene: pfam09706:cas8b2 Type: Subtype-I-B Location: 345495-346970 bp Gene: cd09687:cas7 Type: Subtype-I-B Location: 346990-348003 bp Gene: cd09693:cas5 Type: Type-I Location: 348019-348816 bp Gene: cd09641:cas3HD Type: Type-I Location: 348843-351251 bp CRISPR array Location: 513236-513724 bp Num of repeats: 8 Spacers: s9-s15 CRISPR array Location: 513236-513724 bp Num of repeats: 8 Spacers: s9-s15 Gene: cd09652:cas6 Type: other Location: 703226-703921 bp Gene: mkCas0106:cas8b1 Type: Subtype-I-B Location: 703933-705672 bp Gene: pfam05107:cas7b Type: Type-I Location: 705665-706654 bp Gene: cd09693:cas5 Type: Type-I Location: 706656-707396 bp Gene: cd09641:cas3HD Type: Type-I Location: 707420-709978 bp CRISPR array Location: 710168-713170 bp Num of repeats: 46 Spacers: s16-s60 CRISPR array Location: 710168-713170 bp Num of repeats: 46 Spacers: s16-s60 Gene: pfam01930:cas4 Type: Type-I Location: 713254-713748 bp Gene: cd09722:cas1 Type: universal Location: 713774-714781 bp Gene: cd09725:cas2 Type: universal Location: 714992-715282 bp CRISPR array Location: 870737-870899 bp Num of repeats: 3 Spacers: s61-s62 CRISPR array Location: 870737-870899 bp Num of repeats: 3 Spacers: s61-s62 CRISPR array Location: 1179895-1180255 bp Num of repeats: 6 Spacers: s63-s67 CRISPR array Location: 1179895-1180255 bp Num of repeats: 6 Spacers: s63-s67 Sorry, your browser does not support inline SVG.

Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 269511-270069 bp]: array | spacers
           [Locus range 513236-513724 bp]: array | spacers
           [Locus range 710168-713170 bp]: array | spacers
           [Locus range 870737-870899 bp]: array | spacers
           [Locus range 1179895-1180255 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 3: FMKW01000008.1 Clostridioides difficile isolate CD105HS41 genome assembly, contig: contig000008, whole genome shotgun sequence

⇒Summary: seq-len = 134174 bp; # of CRISPR array = 0; # of cas gene = 3  (type I, III) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 2934-15330 bp Zoom in on locus 1 Gene: COG0640:csa3 Type: Subtype-I-A Location: 2934-3299 bp Gene: cls000259:csm4gr5 Type: Subtype-III-D Location: 13043-13294 bp Gene: unk Type: unknown Location: 13731-14345 bp Gene: COG2378:WYL Type: other Location: 14416-15330 bp Sorry, your browser does not support inline SVG.

Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)