CRISPRone

CRISPRone report for GCA_900095995.1_ASM90009599v1

♦ Seq 1: FMKV01000007.1 Clostridioides difficile isolate CD105HS32 genome assembly, contig: contig000007, whole genome shotgun sequence

⇒Summary: seq-len = 215622 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 124123-124682 bp Zoom in on locus 1 x9 CRISPR array Location: 124123-124682 bp Num of repeats: 9 Spacers: s1-s8 CRISPR array Location: 124123-124682 bp Num of repeats: 9 Spacers: s1-s8 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 124123-124682 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 2: FMKV01000002.1 Clostridioides difficile isolate CD105HS32 genome assembly, contig: contig000002, whole genome shotgun sequence

⇒Summary: seq-len = 463173 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 162772-162932 bp Zoom in on locus 1 x3 CRISPR array Location: 162772-162932 bp Num of repeats: 3 Spacers: s1-s2 CRISPR array Location: 162772-162932 bp Num of repeats: 3 Spacers: s1-s2 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 162772-162932 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 3: FMKV01000026.1 Clostridioides difficile isolate CD105HS32 genome assembly, contig: contig000026, whole genome shotgun sequence

⇒Summary: seq-len = 18479 bp; # of CRISPR array = 3; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 6858-11394 bp Zoom in on locus 1 x6 x3 x10 CRISPR array Location: 6858-7217 bp Num of repeats: 6 Spacers: s1-s5 CRISPR array Location: 6858-7217 bp Num of repeats: 6 Spacers: s1-s5 CRISPR array Location: 8821-8979 bp Num of repeats: 3 Spacers: s6-s7 CRISPR array Location: 8821-8979 bp Num of repeats: 3 Spacers: s6-s7 CRISPR array Location: 10772-11394 bp Num of repeats: 10 Spacers: s8-s16 CRISPR array Location: 10772-11394 bp Num of repeats: 10 Spacers: s8-s16 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 6858-7217 bp]: array | spacers
           [Locus range 8821-8979 bp]: array | spacers
           [Locus range 10772-11394 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 4: FMKV01000017.1 Clostridioides difficile isolate CD105HS32 genome assembly, contig: contig000017, whole genome shotgun sequence

⇒Summary: seq-len = 96485 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 77989-78745 bp Zoom in on locus 1 x12 CRISPR array Location: 77989-78745 bp Num of repeats: 12 Spacers: s1-s11 CRISPR array Location: 77989-78745 bp Num of repeats: 12 Spacers: s1-s11 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 77989-78745 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 5: FMKV01000001.1 Clostridioides difficile isolate CD105HS32 genome assembly, contig: contig000001, whole genome shotgun sequence

⇒Summary: seq-len = 530782 bp; # of CRISPR array = 2; # of cas gene = 9  (type I) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 44861-44955 bp 2 Locus 2: 267221-278006 bp Zoom in on locus 1 x2 Zoom in on locus 2 x20 CRISPR array Location: 44861-44955 bp Num of repeats: 2 Spacers: s1-s1 CRISPR array Location: 44861-44955 bp Num of repeats: 2 Spacers: s1-s1 Gene: pfam13280:WYL Type: other Location: 267221-268108 bp Gene: pfam01881:cas6 Type: other Location: 268186-268923 bp Gene: cd09665:cas8b2 Type: Subtype-I-B Location: 268929-270779 bp Gene: cd09687:cas7 Type: Subtype-I-B Location: 270781-271695 bp Gene: cd09658:cas5 Type: Subtype-I-B Location: 271697-272398 bp Gene: COG1203:cas3 Type: Type-I Location: 272409-274730 bp Gene: pfam01930:cas4 Type: Type-I Location: 274745-275296 bp Gene: cd09722:cas1 Type: universal Location: 275299-276279 bp Gene: cd09725:cas2 Type: universal Location: 276282-276548 bp CRISPR array Location: 276732-278006 bp Num of repeats: 20 Spacers: s2-s20 CRISPR array Location: 276732-278006 bp Num of repeats: 20 Spacers: s2-s20 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 44861-44955 bp]: array | spacers
           [Locus range 276732-278006 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 6: FMKV01000019.1 Clostridioides difficile isolate CD105HS32 genome assembly, contig: contig000019, whole genome shotgun sequence

⇒Summary: seq-len = 68240 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 3487-4571 bp Zoom in on locus 1 x17 CRISPR array Location: 3487-4571 bp Num of repeats: 17 Spacers: s1-s16 CRISPR array Location: 3487-4571 bp Num of repeats: 17 Spacers: s1-s16 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 3487-4571 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 7: FMKV01000003.1 Clostridioides difficile isolate CD105HS32 genome assembly, contig: contig000003, whole genome shotgun sequence

⇒Summary: seq-len = 370900 bp; # of CRISPR array = 2; # of cas gene = 6  (type I, III) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 44436-44794 bp 2 Locus 2: 118076-126397 bp 3 Locus 3: 289669-290286 bp Zoom in on locus 1 x6 Zoom in on locus 2 Zoom in on locus 3 x10 CRISPR array Location: 44436-44794 bp Num of repeats: 6 Spacers: s1-s5 CRISPR array Location: 44436-44794 bp Num of repeats: 6 Spacers: s1-s5 Gene: mkCas0101:csm2gr11 Type: Subtype-III-D Location: 118076-119185 bp Gene: unk Type: unknown Location: 119619-119795 bp Gene: pfam01881:cas6 Type: other Location: 119896-120633 bp Gene: pfam09706:cas8b2 Type: Subtype-I-B Location: 120638-122113 bp Gene: cd09687:cas7 Type: Subtype-I-B Location: 122133-123149 bp Gene: cd09693:cas5 Type: Type-I Location: 123165-123962 bp Gene: cd09641:cas3HD Type: Type-I Location: 123989-126397 bp CRISPR array Location: 289669-290286 bp Num of repeats: 10 Spacers: s6-s14 CRISPR array Location: 289669-290286 bp Num of repeats: 10 Spacers: s6-s14 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 44436-44794 bp]: array | spacers
           [Locus range 289669-290286 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)