CRISPRone

CRISPRone report for GCA_900096005.1_ASM90009600v1

♦ Seq 1: FMMH01000005.1 Clostridioides difficile isolate CD105LC4 genome assembly, contig: contig000005, whole genome shotgun sequence

⇒Summary: seq-len = 236888 bp; # of CRISPR array = 0; # of cas gene = 6  (type I, III) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 183920-191795 bp Zoom in on locus 1 Gene: mkCas0101:csm2gr11 Type: Subtype-III-D Location: 183920-185029 bp Gene: pfam01881:cas6 Type: other Location: 185288-186025 bp Gene: pfam09706:cas8b2 Type: Subtype-I-B Location: 186030-187505 bp Gene: cd09687:cas7 Type: Subtype-I-B Location: 187525-188538 bp Gene: cd09693:cas5 Type: Type-I Location: 188554-189360 bp Gene: cd09641:cas3HD Type: Type-I Location: 189387-191795 bp Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 2: FMMH01000003.1 Clostridioides difficile isolate CD105LC4 genome assembly, contig: contig000003, whole genome shotgun sequence

⇒Summary: seq-len = 289299 bp; # of CRISPR array = 2; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 78328-79014 bp 2 Locus 2: 287403-288360 bp Zoom in on locus 1 x11 Zoom in on locus 2 x15 CRISPR array Location: 78328-79014 bp Num of repeats: 11 Spacers: s1-s10 CRISPR array Location: 78328-79014 bp Num of repeats: 11 Spacers: s1-s10 CRISPR array Location: 287403-288360 bp Num of repeats: 15 Spacers: s11-s24 CRISPR array Location: 287403-288360 bp Num of repeats: 15 Spacers: s11-s24 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 78328-79014 bp]: array | spacers
           [Locus range 287403-288360 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 3: FMMH01000001.1 Clostridioides difficile isolate CD105LC4 genome assembly, contig: contig000001, whole genome shotgun sequence

⇒Summary: seq-len = 470819 bp; # of CRISPR array = 2; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 415970-416596 bp 2 Locus 2: 458216-458311 bp Zoom in on locus 1 x10 Zoom in on locus 2 x2 CRISPR array Location: 415970-416596 bp Num of repeats: 10 Spacers: s1-s9 CRISPR array Location: 415970-416596 bp Num of repeats: 10 Spacers: s1-s9 CRISPR array Location: 458216-458311 bp Num of repeats: 2 Spacers: s10-s10 CRISPR array Location: 458216-458311 bp Num of repeats: 2 Spacers: s10-s10 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 415970-416596 bp]: array | spacers
           [Locus range 458216-458311 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 4: FMMH01000013.1 Clostridioides difficile isolate CD105LC4 genome assembly, contig: contig000013, whole genome shotgun sequence

⇒Summary: seq-len = 141106 bp; # of CRISPR array = 1; # of cas gene = 10  (type I) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 113403-124585 bp Zoom in on locus 1 x25 CRISPR array Location: 113403-115020 bp Num of repeats: 25 Spacers: s1-s24 CRISPR array Location: 113403-115020 bp Num of repeats: 25 Spacers: s1-s24 Gene: cls000290:cas8a3 Type: Subtype-I-A Location: 114249-114482 bp Gene: unk Type: unknown Location: 114704-114871 bp Gene: cd09725:cas2 Type: universal Location: 115204-115470 bp Gene: cd09722:cas1 Type: universal Location: 115473-116453 bp Gene: pfam01930:cas4 Type: Type-I Location: 116456-116974 bp Gene: COG1203:cas3 Type: Type-I Location: 117022-119343 bp Gene: cd09658:cas5 Type: Subtype-I-B Location: 119354-120055 bp Gene: cd09687:cas7 Type: Subtype-I-B Location: 120057-120971 bp Gene: cd09665:cas8b2 Type: Subtype-I-B Location: 120973-122850 bp Gene: pfam01881:cas6 Type: other Location: 122856-123650 bp Gene: pfam13280:WYL Type: other Location: 123671-124585 bp Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 113403-115020 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 5: FMMH01000004.1 Clostridioides difficile isolate CD105LC4 genome assembly, contig: contig000004, whole genome shotgun sequence

⇒Summary: seq-len = 266878 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 153301-154124 bp Zoom in on locus 1 x13 CRISPR array Location: 153301-154124 bp Num of repeats: 13 Spacers: s1-s12 CRISPR array Location: 153301-154124 bp Num of repeats: 13 Spacers: s1-s12 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 153301-154124 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 6: FMMH01000002.1 Clostridioides difficile isolate CD105LC4 genome assembly, contig: contig000002, whole genome shotgun sequence

⇒Summary: seq-len = 437552 bp; # of CRISPR array = 1; # of cas gene = 5  (type I) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 360472-367005 bp Zoom in on locus 1 x10 Gene: cd09693:cas5 Type: Type-I Location: 360472-361119 bp Gene: pfam01881:cas6 Type: other Location: 361110-361874 bp Gene: cls000029:cas8b2 Type: Subtype-I-B Location: 361876-363042 bp Gene: cd09687:cas7 Type: Subtype-I-B Location: 363063-364133 bp Gene: COG1203:cas3 Type: Type-I Location: 364144-366129 bp CRISPR array Location: 366382-367005 bp Num of repeats: 10 Spacers: s1-s9 CRISPR array Location: 366382-367005 bp Num of repeats: 10 Spacers: s1-s9 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 366382-367005 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 7: FMMH01000010.1 Clostridioides difficile isolate CD105LC4 genome assembly, contig: contig000010, whole genome shotgun sequence

⇒Summary: seq-len = 149083 bp; # of CRISPR array = 3; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 30692-30986 bp 2 Locus 2: 123369-125880 bp Zoom in on locus 1 x5 Zoom in on locus 2 x6 x5 CRISPR array Location: 30692-30986 bp Num of repeats: 5 Spacers: s1-s4 CRISPR array Location: 30692-30986 bp Num of repeats: 5 Spacers: s1-s4 CRISPR array Location: 123369-123726 bp Num of repeats: 6 Spacers: s5-s9 CRISPR array Location: 123369-123726 bp Num of repeats: 6 Spacers: s5-s9 CRISPR array Location: 125590-125880 bp Num of repeats: 5 Spacers: s10-s13 CRISPR array Location: 125590-125880 bp Num of repeats: 5 Spacers: s10-s13 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 30692-30986 bp]: array | spacers
           [Locus range 123369-123726 bp]: array | spacers
           [Locus range 125590-125880 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)