CRISPRone

CRISPRone report for GCA_900096025.1_ASM90009602v1

♦ Seq 1: FMMG01000003.1 Clostridioides difficile isolate CD105LC5 genome assembly, contig: contig000003, whole genome shotgun sequence

⇒Summary: seq-len = 354355 bp; # of CRISPR array = 2; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 11900-11994 bp 2 Locus 2: 53615-54240 bp Zoom in on locus 1 x2 Zoom in on locus 2 x10 CRISPR array Location: 11900-11994 bp Num of repeats: 2 Spacers: s1-s1 CRISPR array Location: 11900-11994 bp Num of repeats: 2 Spacers: s1-s1 CRISPR array Location: 53615-54240 bp Num of repeats: 10 Spacers: s2-s10 CRISPR array Location: 53615-54240 bp Num of repeats: 10 Spacers: s2-s10 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 11900-11994 bp]: array | spacers
           [Locus range 53615-54240 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 2: FMMG01000001.1 Clostridioides difficile isolate CD105LC5 genome assembly, contig: contig000001, whole genome shotgun sequence

⇒Summary: seq-len = 437499 bp; # of CRISPR array = 1; # of cas gene = 5  (type I) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 70592-77124 bp Zoom in on locus 1 x10 CRISPR array Location: 70592-71214 bp Num of repeats: 10 Spacers: s1-s9 CRISPR array Location: 70592-71214 bp Num of repeats: 10 Spacers: s1-s9 Gene: COG1203:cas3 Type: Type-I Location: 71467-73452 bp Gene: cd09687:cas7 Type: Subtype-I-B Location: 73463-74533 bp Gene: cls000029:cas8b2 Type: Subtype-I-B Location: 74554-75720 bp Gene: pfam01881:cas6 Type: other Location: 75722-76486 bp Gene: cd09693:cas5 Type: Type-I Location: 76477-77124 bp Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 70592-71214 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 3: FMMG01000010.1 Clostridioides difficile isolate CD105LC5 genome assembly, contig: contig000010, whole genome shotgun sequence

⇒Summary: seq-len = 141026 bp; # of CRISPR array = 1; # of cas gene = 10  (type I) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 16443-26752 bp Zoom in on locus 1 x25 Gene: pfam13280:WYL Type: other Location: 16443-17330 bp Gene: pfam01881:cas6 Type: other Location: 17408-18145 bp Gene: cd09665:cas8b2 Type: Subtype-I-B Location: 18151-20028 bp Gene: cd09687:cas7 Type: Subtype-I-B Location: 20030-20944 bp Gene: cd09658:cas5 Type: Subtype-I-B Location: 20946-21647 bp Gene: COG1203:cas3 Type: Type-I Location: 21658-23979 bp Gene: pfam01930:cas4 Type: Type-I Location: 23994-24545 bp Gene: cd09722:cas1 Type: universal Location: 24548-25528 bp Gene: cd09725:cas2 Type: universal Location: 25531-25797 bp CRISPR array Location: 25981-27599 bp Num of repeats: 25 Spacers: s1-s24 CRISPR array Location: 25981-27599 bp Num of repeats: 25 Spacers: s1-s24 Gene: unk Type: unknown Location: 26130-26297 bp Gene: cls000290:cas8a3 Type: Subtype-I-A Location: 26519-26752 bp Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 25981-27599 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 4: FMMG01000008.1 Clostridioides difficile isolate CD105LC5 genome assembly, contig: contig000008, whole genome shotgun sequence

⇒Summary: seq-len = 149080 bp; # of CRISPR array = 3; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 30689-30983 bp 2 Locus 2: 123366-125877 bp Zoom in on locus 1 x5 Zoom in on locus 2 x6 x5 CRISPR array Location: 30689-30983 bp Num of repeats: 5 Spacers: s1-s4 CRISPR array Location: 30689-30983 bp Num of repeats: 5 Spacers: s1-s4 CRISPR array Location: 123366-123723 bp Num of repeats: 6 Spacers: s5-s9 CRISPR array Location: 123366-123723 bp Num of repeats: 6 Spacers: s5-s9 CRISPR array Location: 125587-125877 bp Num of repeats: 5 Spacers: s10-s13 CRISPR array Location: 125587-125877 bp Num of repeats: 5 Spacers: s10-s13 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 30689-30983 bp]: array | spacers
           [Locus range 123366-123723 bp]: array | spacers
           [Locus range 125587-125877 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 5: FMMG01000002.1 Clostridioides difficile isolate CD105LC5 genome assembly, contig: contig000002, whole genome shotgun sequence

⇒Summary: seq-len = 408154 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 112188-113012 bp Zoom in on locus 1 x13 CRISPR array Location: 112188-113012 bp Num of repeats: 13 Spacers: s1-s12 CRISPR array Location: 112188-113012 bp Num of repeats: 13 Spacers: s1-s12 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 112188-113012 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 6: FMMG01000005.1 Clostridioides difficile isolate CD105LC5 genome assembly, contig: contig000005, whole genome shotgun sequence

⇒Summary: seq-len = 289254 bp; # of CRISPR array = 2; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 936-1894 bp 2 Locus 2: 210282-210969 bp Zoom in on locus 1 x15 Zoom in on locus 2 x11 CRISPR array Location: 936-1894 bp Num of repeats: 15 Spacers: s1-s14 CRISPR array Location: 936-1894 bp Num of repeats: 15 Spacers: s1-s14 CRISPR array Location: 210282-210969 bp Num of repeats: 11 Spacers: s15-s24 CRISPR array Location: 210282-210969 bp Num of repeats: 11 Spacers: s15-s24 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 936-1894 bp]: array | spacers
           [Locus range 210282-210969 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 7: FMMG01000004.1 Clostridioides difficile isolate CD105LC5 genome assembly, contig: contig000004, whole genome shotgun sequence

⇒Summary: seq-len = 350432 bp; # of CRISPR array = 0; # of cas gene = 6  (type I, III) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 183360-191235 bp Zoom in on locus 1 Gene: mkCas0101:csm2gr11 Type: Subtype-III-D Location: 183360-184469 bp Gene: pfam01881:cas6 Type: other Location: 184728-185465 bp Gene: pfam09706:cas8b2 Type: Subtype-I-B Location: 185470-186945 bp Gene: cd09687:cas7 Type: Subtype-I-B Location: 186965-187978 bp Gene: cd09693:cas5 Type: Type-I Location: 187994-188800 bp Gene: cd09641:cas3HD Type: Type-I Location: 188827-191235 bp Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)