CRISPRone

CRISPRone report for GCA_900096035.1_ASM90009603v1

♦ Seq 1: FMLU01000012.1 Clostridioides difficile isolate CD105LC3 genome assembly, contig: contig000012, whole genome shotgun sequence

⇒Summary: seq-len = 50952 bp; # of CRISPR array = 2; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 13415-14534 bp Zoom in on locus 1 x3 x6 CRISPR array Location: 13415-13576 bp Num of repeats: 3 Spacers: s1-s2 CRISPR array Location: 13415-13576 bp Num of repeats: 3 Spacers: s1-s2 CRISPR array Location: 14175-14534 bp Num of repeats: 6 Spacers: s3-s7 CRISPR array Location: 14175-14534 bp Num of repeats: 6 Spacers: s3-s7 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 13415-13576 bp]: array | spacers
           [Locus range 14175-14534 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 2: FMLU01000004.1 Clostridioides difficile isolate CD105LC3 genome assembly, contig: contig000004, whole genome shotgun sequence

⇒Summary: seq-len = 443068 bp; # of CRISPR array = 2; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 121000-122082 bp 2 Locus 2: 438573-438667 bp Zoom in on locus 1 x17 Zoom in on locus 2 x2 CRISPR array Location: 121000-122082 bp Num of repeats: 17 Spacers: s1-s16 CRISPR array Location: 121000-122082 bp Num of repeats: 17 Spacers: s1-s16 CRISPR array Location: 438573-438667 bp Num of repeats: 2 Spacers: s17-s17 CRISPR array Location: 438573-438667 bp Num of repeats: 2 Spacers: s17-s17 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 121000-122082 bp]: array | spacers
           [Locus range 438573-438667 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 3: FMLU01000003.1 Clostridioides difficile isolate CD105LC3 genome assembly, contig: contig000003, whole genome shotgun sequence

⇒Summary: seq-len = 486153 bp; # of CRISPR array = 2; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 190387-191011 bp 2 Locus 2: 394457-395146 bp Zoom in on locus 1 x10 Zoom in on locus 2 x11 CRISPR array Location: 190387-191011 bp Num of repeats: 10 Spacers: s1-s9 CRISPR array Location: 190387-191011 bp Num of repeats: 10 Spacers: s1-s9 CRISPR array Location: 394457-395146 bp Num of repeats: 11 Spacers: s10-s19 CRISPR array Location: 394457-395146 bp Num of repeats: 11 Spacers: s10-s19 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 190387-191011 bp]: array | spacers
           [Locus range 394457-395146 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 4: FMLU01000001.1 Clostridioides difficile isolate CD105LC3 genome assembly, contig: contig000001, whole genome shotgun sequence

⇒Summary: seq-len = 851585 bp; # of CRISPR array = 2; # of cas gene = 6  (type I, III) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 245024-245450 bp 2 Locus 2: 318731-326587 bp 3 Locus 3: 489086-489903 bp Zoom in on locus 1 x7 Zoom in on locus 2 Zoom in on locus 3 x13 CRISPR array Location: 245024-245450 bp Num of repeats: 7 Spacers: s1-s6 CRISPR array Location: 245024-245450 bp Num of repeats: 7 Spacers: s1-s6 Gene: mkCas0101:csm2gr11 Type: Subtype-III-D Location: 318731-319840 bp Gene: pfam01881:cas6 Type: other Location: 320098-320835 bp Gene: pfam09706:cas8b2 Type: Subtype-I-B Location: 320840-322306 bp Gene: cd09687:cas7 Type: Subtype-I-B Location: 322326-323339 bp Gene: cd09693:cas5 Type: Type-I Location: 323355-324152 bp Gene: cd09641:cas3HD Type: Type-I Location: 324179-326587 bp CRISPR array Location: 489086-489903 bp Num of repeats: 13 Spacers: s7-s18 CRISPR array Location: 489086-489903 bp Num of repeats: 13 Spacers: s7-s18 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 245024-245450 bp]: array | spacers
           [Locus range 489086-489903 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 5: FMLU01000005.1 Clostridioides difficile isolate CD105LC3 genome assembly, contig: contig000005, whole genome shotgun sequence

⇒Summary: seq-len = 413944 bp; # of CRISPR array = 3; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 313001-314543 bp 2 Locus 2: 404478-405359 bp Zoom in on locus 1 x24 Zoom in on locus 2 x9 x3 CRISPR array Location: 313001-314543 bp Num of repeats: 24 Spacers: s1-s23 CRISPR array Location: 313001-314543 bp Num of repeats: 24 Spacers: s1-s23 CRISPR array Location: 404478-405030 bp Num of repeats: 9 Spacers: s24-s31 CRISPR array Location: 404478-405030 bp Num of repeats: 9 Spacers: s24-s31 CRISPR array Location: 405199-405359 bp Num of repeats: 3 Spacers: s32-s33 CRISPR array Location: 405199-405359 bp Num of repeats: 3 Spacers: s32-s33 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 313001-314543 bp]: array | spacers
           [Locus range 404478-405030 bp]: array | spacers
           [Locus range 405199-405359 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)