CRISPRone

CRISPRone report for GCA_900096055.1_ASM90009605v1

♦ Seq 1: FMLF01000001.1 Clostridioides difficile isolate CD105HS1 genome assembly, contig: contig000001, whole genome shotgun sequence

⇒Summary: seq-len = 780955 bp; # of CRISPR array = 2; # of cas gene = 6  (type I, III) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 257337-258156 bp 2 Locus 2: 420212-428558 bp 3 Locus 3: 501918-502475 bp Zoom in on locus 1 x13 Zoom in on locus 2 Zoom in on locus 3 x9 CRISPR array Location: 257337-258156 bp Num of repeats: 13 Spacers: s1-s12 CRISPR array Location: 257337-258156 bp Num of repeats: 13 Spacers: s1-s12 Gene: cd09641:cas3HD Type: Type-I Location: 420212-422620 bp Gene: cd09693:cas5 Type: Type-I Location: 422647-423444 bp Gene: cd09687:cas7 Type: Subtype-I-B Location: 423460-424476 bp Gene: pfam09706:cas8b2 Type: Subtype-I-B Location: 424496-425971 bp Gene: pfam01881:cas6 Type: other Location: 425976-426713 bp Gene: unk Type: unknown Location: 426814-426990 bp Gene: mkCas0101:csm2gr11 Type: Subtype-III-D Location: 427449-428558 bp CRISPR array Location: 501918-502475 bp Num of repeats: 9 Spacers: s13-s20 CRISPR array Location: 501918-502475 bp Num of repeats: 9 Spacers: s13-s20 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 257337-258156 bp]: array | spacers
           [Locus range 501918-502475 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 2: FMLF01000004.1 Clostridioides difficile isolate CD105HS1 genome assembly, contig: contig000004, whole genome shotgun sequence

⇒Summary: seq-len = 307847 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 86128-87011 bp Zoom in on locus 1 x14 CRISPR array Location: 86128-87011 bp Num of repeats: 14 Spacers: s1-s13 CRISPR array Location: 86128-87011 bp Num of repeats: 14 Spacers: s1-s13 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 86128-87011 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 3: FMLF01000018.1 Clostridioides difficile isolate CD105HS1 genome assembly, contig: contig000018, whole genome shotgun sequence

⇒Summary: seq-len = 61504 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 56562-57644 bp Zoom in on locus 1 x17 CRISPR array Location: 56562-57644 bp Num of repeats: 17 Spacers: s1-s16 CRISPR array Location: 56562-57644 bp Num of repeats: 17 Spacers: s1-s16 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 56562-57644 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 4: FMLF01000003.1 Clostridioides difficile isolate CD105HS1 genome assembly, contig: contig000003, whole genome shotgun sequence

⇒Summary: seq-len = 336567 bp; # of CRISPR array = 2; # of cas gene = 9  (type I) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 42746-42840 bp 2 Locus 2: 257363-268244 bp Zoom in on locus 1 x2 Zoom in on locus 2 x21 CRISPR array Location: 42746-42840 bp Num of repeats: 2 Spacers: s1-s1 CRISPR array Location: 42746-42840 bp Num of repeats: 2 Spacers: s1-s1 Gene: pfam13280:WYL Type: other Location: 257363-258250 bp Gene: pfam01881:cas6 Type: other Location: 258328-259065 bp Gene: cd09665:cas8b2 Type: Subtype-I-B Location: 259071-260948 bp Gene: cd09687:cas7 Type: Subtype-I-B Location: 260950-261864 bp Gene: cd09658:cas5 Type: Subtype-I-B Location: 261866-262567 bp Gene: COG1203:cas3 Type: Type-I Location: 262578-264899 bp Gene: pfam01930:cas4 Type: Type-I Location: 264914-265465 bp Gene: cd09722:cas1 Type: universal Location: 265468-266448 bp Gene: cd09725:cas2 Type: universal Location: 266451-266717 bp CRISPR array Location: 266901-268244 bp Num of repeats: 21 Spacers: s2-s21 CRISPR array Location: 266901-268244 bp Num of repeats: 21 Spacers: s2-s21 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 42746-42840 bp]: array | spacers
           [Locus range 266901-268244 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 5: FMLF01000005.1 Clostridioides difficile isolate CD105HS1 genome assembly, contig: contig000005, whole genome shotgun sequence

⇒Summary: seq-len = 296968 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 194063-194223 bp Zoom in on locus 1 x3 CRISPR array Location: 194063-194223 bp Num of repeats: 3 Spacers: s1-s2 CRISPR array Location: 194063-194223 bp Num of repeats: 3 Spacers: s1-s2 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 194063-194223 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 6: FMLF01000016.1 Clostridioides difficile isolate CD105HS1 genome assembly, contig: contig000016, whole genome shotgun sequence

⇒Summary: seq-len = 80865 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 62268-62692 bp Zoom in on locus 1 x7 CRISPR array Location: 62268-62692 bp Num of repeats: 7 Spacers: s1-s6 CRISPR array Location: 62268-62692 bp Num of repeats: 7 Spacers: s1-s6 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 62268-62692 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 7: FMLF01000008.1 Clostridioides difficile isolate CD105HS1 genome assembly, contig: contig000008, whole genome shotgun sequence

⇒Summary: seq-len = 214108 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 90980-91738 bp Zoom in on locus 1 x12 CRISPR array Location: 90980-91738 bp Num of repeats: 12 Spacers: s1-s11 CRISPR array Location: 90980-91738 bp Num of repeats: 12 Spacers: s1-s11 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 90980-91738 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)