CRISPRone

CRISPRone report for GCA_900096065.1_ASM90009606v1

♦ Seq 1: FMKZ01000010.1 Clostridioides difficile isolate CD105HS44 genome assembly, contig: contig000010, whole genome shotgun sequence

⇒Summary: seq-len = 118812 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 56589-57801 bp Zoom in on locus 1 x19 CRISPR array Location: 56589-57801 bp Num of repeats: 19 Spacers: s1-s18 CRISPR array Location: 56589-57801 bp Num of repeats: 19 Spacers: s1-s18 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 56589-57801 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 2: FMKZ01000009.1 Clostridioides difficile isolate CD105HS44 genome assembly, contig: contig000009, whole genome shotgun sequence

⇒Summary: seq-len = 131516 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 112713-113204 bp Zoom in on locus 1 x8 CRISPR array Location: 112713-113204 bp Num of repeats: 8 Spacers: s1-s7 CRISPR array Location: 112713-113204 bp Num of repeats: 8 Spacers: s1-s7 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 112713-113204 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 3: FMKZ01000001.1 Clostridioides difficile isolate CD105HS44 genome assembly, contig: contig000001, whole genome shotgun sequence

⇒Summary: seq-len = 630643 bp; # of CRISPR array = 2; # of cas gene = 9  (type I) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 114558-115507 bp 2 Locus 2: 372523-382610 bp Zoom in on locus 1 x15 Zoom in on locus 2 x9 CRISPR array Location: 114558-115507 bp Num of repeats: 15 Spacers: s1-s14 CRISPR array Location: 114558-115507 bp Num of repeats: 15 Spacers: s1-s14 Gene: pfam13280:WYL Type: other Location: 372523-373410 bp Gene: pfam01881:cas6 Type: other Location: 373488-374225 bp Gene: cd09665:cas8b2 Type: Subtype-I-B Location: 374231-376108 bp Gene: cd09687:cas7 Type: Subtype-I-B Location: 376110-377024 bp Gene: cd09658:cas5 Type: Subtype-I-B Location: 377026-377727 bp Gene: COG1203:cas3 Type: Type-I Location: 377738-380059 bp Gene: pfam01930:cas4 Type: Type-I Location: 380074-380544 bp Gene: cd09722:cas1 Type: universal Location: 380628-381608 bp Gene: cd09725:cas2 Type: universal Location: 381611-381877 bp CRISPR array Location: 382061-382610 bp Num of repeats: 9 Spacers: s15-s22 CRISPR array Location: 382061-382610 bp Num of repeats: 9 Spacers: s15-s22 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 114558-115507 bp]: array | spacers
           [Locus range 382061-382610 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 4: FMKZ01000002.1 Clostridioides difficile isolate CD105HS44 genome assembly, contig: contig000002, whole genome shotgun sequence

⇒Summary: seq-len = 588391 bp; # of CRISPR array = 2; # of cas gene = 6  (type I, III) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 96068-96489 bp 2 Locus 2: 262027-269892 bp 3 Locus 3: 343236-343731 bp Zoom in on locus 1 x7 Zoom in on locus 2 Zoom in on locus 3 x8 CRISPR array Location: 96068-96489 bp Num of repeats: 7 Spacers: s1-s6 CRISPR array Location: 96068-96489 bp Num of repeats: 7 Spacers: s1-s6 Gene: cd09641:cas3HD Type: Type-I Location: 262027-264435 bp Gene: cd09693:cas5 Type: Type-I Location: 264462-265259 bp Gene: cd09687:cas7 Type: Subtype-I-B Location: 265275-266288 bp Gene: pfam09706:cas8b2 Type: Subtype-I-B Location: 266308-267783 bp Gene: pfam01881:cas6 Type: other Location: 267788-268525 bp Gene: mkCas0101:csm2gr11 Type: Subtype-III-D Location: 268783-269892 bp CRISPR array Location: 343236-343731 bp Num of repeats: 8 Spacers: s7-s13 CRISPR array Location: 343236-343731 bp Num of repeats: 8 Spacers: s7-s13 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 96068-96489 bp]: array | spacers
           [Locus range 343236-343731 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)