CRISPRone

CRISPRone report for GCA_900096075.1_ASM90009607v1

♦ Seq 1: FMLB01000002.1 Clostridioides difficile isolate CD105HS4 genome assembly, contig: contig000002, whole genome shotgun sequence

⇒Summary: seq-len = 507473 bp; # of CRISPR array = 2; # of cas gene = 9  (type I) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 252675-263812 bp 2 Locus 2: 486241-486334 bp Zoom in on locus 1 x25 Zoom in on locus 2 x2 CRISPR array Location: 252675-254274 bp Num of repeats: 25 Spacers: s1-s24 CRISPR array Location: 252675-254274 bp Num of repeats: 25 Spacers: s1-s24 Gene: cd09725:cas2 Type: universal Location: 254458-254724 bp Gene: cd09722:cas1 Type: universal Location: 254727-255707 bp Gene: pfam01930:cas4 Type: Type-I Location: 255710-256228 bp Gene: COG1203:cas3 Type: Type-I Location: 256276-258597 bp Gene: cd09658:cas5 Type: Subtype-I-B Location: 258608-259309 bp Gene: cd09687:cas7 Type: Subtype-I-B Location: 259311-260225 bp Gene: cd09665:cas8b2 Type: Subtype-I-B Location: 260227-262077 bp Gene: pfam01881:cas6 Type: other Location: 262083-262877 bp Gene: pfam13280:WYL Type: other Location: 262898-263812 bp CRISPR array Location: 486241-486334 bp Num of repeats: 2 Spacers: s25-s25 CRISPR array Location: 486241-486334 bp Num of repeats: 2 Spacers: s25-s25 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 252675-254274 bp]: array | spacers
           [Locus range 486241-486334 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 2: FMLB01000004.1 Clostridioides difficile isolate CD105HS4 genome assembly, contig: contig000004, whole genome shotgun sequence

⇒Summary: seq-len = 370709 bp; # of CRISPR array = 2; # of cas gene = 6  (type I, III) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 44385-44743 bp 2 Locus 2: 118025-126346 bp 3 Locus 3: 289560-290177 bp Zoom in on locus 1 x6 Zoom in on locus 2 Zoom in on locus 3 x10 CRISPR array Location: 44385-44743 bp Num of repeats: 6 Spacers: s1-s5 CRISPR array Location: 44385-44743 bp Num of repeats: 6 Spacers: s1-s5 Gene: mkCas0101:csm2gr11 Type: Subtype-III-D Location: 118025-119134 bp Gene: unk Type: unknown Location: 119568-119744 bp Gene: pfam01881:cas6 Type: other Location: 119845-120582 bp Gene: pfam09706:cas8b2 Type: Subtype-I-B Location: 120587-122062 bp Gene: cd09687:cas7 Type: Subtype-I-B Location: 122082-123098 bp Gene: cd09693:cas5 Type: Type-I Location: 123114-123911 bp Gene: cd09641:cas3HD Type: Type-I Location: 123938-126346 bp CRISPR array Location: 289560-290177 bp Num of repeats: 10 Spacers: s6-s14 CRISPR array Location: 289560-290177 bp Num of repeats: 10 Spacers: s6-s14 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 44385-44743 bp]: array | spacers
           [Locus range 289560-290177 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 3: FMLB01000007.1 Clostridioides difficile isolate CD105HS4 genome assembly, contig: contig000007, whole genome shotgun sequence

⇒Summary: seq-len = 216061 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 124574-125067 bp Zoom in on locus 1 x8 CRISPR array Location: 124574-125067 bp Num of repeats: 8 Spacers: s1-s7 CRISPR array Location: 124574-125067 bp Num of repeats: 8 Spacers: s1-s7 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 124574-125067 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 4: FMLB01000006.1 Clostridioides difficile isolate CD105HS4 genome assembly, contig: contig000006, whole genome shotgun sequence

⇒Summary: seq-len = 283007 bp; # of CRISPR array = 2; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 139511-141694 bp Zoom in on locus 1 x3 x4 CRISPR array Location: 139511-139670 bp Num of repeats: 3 Spacers: s1-s2 CRISPR array Location: 139511-139670 bp Num of repeats: 3 Spacers: s1-s2 CRISPR array Location: 141470-141694 bp Num of repeats: 4 Spacers: s3-s5 CRISPR array Location: 141470-141694 bp Num of repeats: 4 Spacers: s3-s5 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 139511-139670 bp]: array | spacers
           [Locus range 141470-141694 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 5: FMLB01000012.1 Clostridioides difficile isolate CD105HS4 genome assembly, contig: contig000012, whole genome shotgun sequence

⇒Summary: seq-len = 121144 bp; # of CRISPR array = 2; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 17792-18549 bp 2 Locus 2: 105303-105464 bp Zoom in on locus 1 x12 Zoom in on locus 2 x3 CRISPR array Location: 17792-18549 bp Num of repeats: 12 Spacers: s1-s11 CRISPR array Location: 17792-18549 bp Num of repeats: 12 Spacers: s1-s11 CRISPR array Location: 105303-105464 bp Num of repeats: 3 Spacers: s12-s13 CRISPR array Location: 105303-105464 bp Num of repeats: 3 Spacers: s12-s13 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 17792-18549 bp]: array | spacers
           [Locus range 105303-105464 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 6: FMLB01000001.1 Clostridioides difficile isolate CD105HS4 genome assembly, contig: contig000001, whole genome shotgun sequence

⇒Summary: seq-len = 740048 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 330639-331788 bp Zoom in on locus 1 x18 CRISPR array Location: 330639-331788 bp Num of repeats: 18 Spacers: s1-s17 CRISPR array Location: 330639-331788 bp Num of repeats: 18 Spacers: s1-s17 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 330639-331788 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 7: FMLB01000003.1 Clostridioides difficile isolate CD105HS4 genome assembly, contig: contig000003, whole genome shotgun sequence

⇒Summary: seq-len = 438721 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 328297-328458 bp Zoom in on locus 1 x3 CRISPR array Location: 328297-328458 bp Num of repeats: 3 Spacers: s1-s2 CRISPR array Location: 328297-328458 bp Num of repeats: 3 Spacers: s1-s2 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 328297-328458 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 8: FMLB01000017.1 Clostridioides difficile isolate CD105HS4 genome assembly, contig: contig000017, whole genome shotgun sequence

⇒Summary: seq-len = 68369 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 63683-64832 bp Zoom in on locus 1 x18 CRISPR array Location: 63683-64832 bp Num of repeats: 18 Spacers: s1-s17 CRISPR array Location: 63683-64832 bp Num of repeats: 18 Spacers: s1-s17 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 63683-64832 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)