CRISPRone

CRISPRone report for GCA_900096085.1_ASM90009608v1

♦ Seq 1: FMKO01000005.1 Clostridioides difficile isolate CD105HS35 genome assembly, contig: contig000005, whole genome shotgun sequence

⇒Summary: seq-len = 249701 bp; # of CRISPR array = 1; # of cas gene = 6  (type I, III) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 123379-131700 bp 2 Locus 2: 204980-205073 bp Zoom in on locus 1 Zoom in on locus 2 x2 Gene: cd09641:cas3HD Type: Type-I Location: 123379-125787 bp Gene: cd09693:cas5 Type: Type-I Location: 125814-126611 bp Gene: cd09687:cas7 Type: Subtype-I-B Location: 126627-127643 bp Gene: pfam09706:cas8b2 Type: Subtype-I-B Location: 127663-129138 bp Gene: pfam01881:cas6 Type: other Location: 129143-129880 bp Gene: unk Type: unknown Location: 129981-130157 bp Gene: mkCas0101:csm2gr11 Type: Subtype-III-D Location: 130591-131700 bp CRISPR array Location: 204980-205073 bp Num of repeats: 2 Spacers: s1-s1 CRISPR array Location: 204980-205073 bp Num of repeats: 2 Spacers: s1-s1 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 204980-205073 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 2: FMKO01000019.1 Clostridioides difficile isolate CD105HS35 genome assembly, contig: contig000019, whole genome shotgun sequence

⇒Summary: seq-len = 67567 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 3487-3911 bp Zoom in on locus 1 x7 CRISPR array Location: 3487-3911 bp Num of repeats: 7 Spacers: s1-s6 CRISPR array Location: 3487-3911 bp Num of repeats: 7 Spacers: s1-s6 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 3487-3911 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 3: FMKO01000002.1 Clostridioides difficile isolate CD105HS35 genome assembly, contig: contig000002, whole genome shotgun sequence

⇒Summary: seq-len = 426987 bp; # of CRISPR array = 2; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 65683-66169 bp 2 Locus 2: 414637-415062 bp Zoom in on locus 1 x8 Zoom in on locus 2 x7 CRISPR array Location: 65683-66169 bp Num of repeats: 8 Spacers: s1-s7 CRISPR array Location: 65683-66169 bp Num of repeats: 8 Spacers: s1-s7 CRISPR array Location: 414637-415062 bp Num of repeats: 7 Spacers: s8-s13 CRISPR array Location: 414637-415062 bp Num of repeats: 7 Spacers: s8-s13 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 65683-66169 bp]: array | spacers
           [Locus range 414637-415062 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 4: FMKO01000004.1 Clostridioides difficile isolate CD105HS35 genome assembly, contig: contig000004, whole genome shotgun sequence

⇒Summary: seq-len = 276230 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 189833-190194 bp Zoom in on locus 1 x6 CRISPR array Location: 189833-190194 bp Num of repeats: 6 Spacers: s1-s5 CRISPR array Location: 189833-190194 bp Num of repeats: 6 Spacers: s1-s5 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 189833-190194 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 5: FMKO01000001.1 Clostridioides difficile isolate CD105HS35 genome assembly, contig: contig000001, whole genome shotgun sequence

⇒Summary: seq-len = 529675 bp; # of CRISPR array = 2; # of cas gene = 9  (type I) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 246325-257324 bp 2 Locus 2: 471192-471285 bp Zoom in on locus 1 x23 Zoom in on locus 2 x2 CRISPR array Location: 246325-247786 bp Num of repeats: 23 Spacers: s1-s22 CRISPR array Location: 246325-247786 bp Num of repeats: 23 Spacers: s1-s22 Gene: cd09725:cas2 Type: universal Location: 247970-248236 bp Gene: cd09722:cas1 Type: universal Location: 248239-249219 bp Gene: pfam01930:cas4 Type: Type-I Location: 249222-249740 bp Gene: cd09641:cas3HD Type: Type-I Location: 249788-252109 bp Gene: cd09658:cas5 Type: Subtype-I-B Location: 252120-252821 bp Gene: cd09687:cas7 Type: Subtype-I-B Location: 252823-253737 bp Gene: cd09665:cas8b2 Type: Subtype-I-B Location: 253739-255589 bp Gene: pfam01881:cas6 Type: other Location: 255595-256389 bp Gene: pfam13280:WYL Type: other Location: 256410-257324 bp CRISPR array Location: 471192-471285 bp Num of repeats: 2 Spacers: s23-s23 CRISPR array Location: 471192-471285 bp Num of repeats: 2 Spacers: s23-s23 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 246325-247786 bp]: array | spacers
           [Locus range 471192-471285 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 6: FMKO01000010.1 Clostridioides difficile isolate CD105HS35 genome assembly, contig: contig000010, whole genome shotgun sequence

⇒Summary: seq-len = 190171 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 17983-18538 bp Zoom in on locus 1 x9 CRISPR array Location: 17983-18538 bp Num of repeats: 9 Spacers: s1-s8 CRISPR array Location: 17983-18538 bp Num of repeats: 9 Spacers: s1-s8 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 17983-18538 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 7: FMKO01000008.1 Clostridioides difficile isolate CD105HS35 genome assembly, contig: contig000008, whole genome shotgun sequence

⇒Summary: seq-len = 216280 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 124581-125337 bp Zoom in on locus 1 x12 CRISPR array Location: 124581-125337 bp Num of repeats: 12 Spacers: s1-s11 CRISPR array Location: 124581-125337 bp Num of repeats: 12 Spacers: s1-s11 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 124581-125337 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)