CRISPRone

CRISPRone report for GCA_900096095.1_ASM90009609v1

♦ Seq 1: FMLD01000002.1 Clostridioides difficile isolate CD105HS26 genome assembly, contig: contig000002, whole genome shotgun sequence

⇒Summary: seq-len = 295295 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 104083-104709 bp Zoom in on locus 1 x10 CRISPR array Location: 104083-104709 bp Num of repeats: 10 Spacers: s1-s9 CRISPR array Location: 104083-104709 bp Num of repeats: 10 Spacers: s1-s9 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 104083-104709 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 2: FMLD01000011.1 Clostridioides difficile isolate CD105HS26 genome assembly, contig: contig000011, whole genome shotgun sequence

⇒Summary: seq-len = 140983 bp; # of CRISPR array = 1; # of cas gene = 8  (type I) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 61995-73582 bp Zoom in on locus 1 x39 Gene: cd09725:cas2 Type: universal Location: 61995-62285 bp Gene: cd09722:cas1 Type: universal Location: 62496-63503 bp Gene: pfam01930:cas4 Type: Type-I Location: 63529-64023 bp CRISPR array Location: 64108-66640 bp Num of repeats: 39 Spacers: s1-s38 CRISPR array Location: 64108-66640 bp Num of repeats: 39 Spacers: s1-s38 Gene: unk Type: unknown Location: 64731-64859 bp Gene: cd09641:cas3HD Type: Type-I Location: 66830-69388 bp Gene: cd09693:cas5 Type: Type-I Location: 69412-70152 bp Gene: pfam05107:cas7b Type: Type-I Location: 70154-71143 bp Gene: mkCas0106:cas8b1 Type: Subtype-I-B Location: 71136-72875 bp Gene: cd09652:cas6 Type: other Location: 72887-73582 bp Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 64108-66640 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 3: FMLD01000013.1 Clostridioides difficile isolate CD105HS26 genome assembly, contig: contig000013, whole genome shotgun sequence

⇒Summary: seq-len = 130721 bp; # of CRISPR array = 1; # of cas gene = 2  (type I) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 12306-24617 bp Zoom in on locus 1 x44 Gene: COG0640:csa3 Type: Subtype-I-A Location: 12306-12683 bp Gene: cd09718:cas1 Type: universal Location: 12695-14350 bp CRISPR array Location: 21752-24617 bp Num of repeats: 44 Spacers: s1-s43 CRISPR array Location: 21752-24617 bp Num of repeats: 44 Spacers: s1-s43 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 21752-24617 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 4: FMLD01000010.1 Clostridioides difficile isolate CD105HS26 genome assembly, contig: contig000010, whole genome shotgun sequence

⇒Summary: seq-len = 147302 bp; # of CRISPR array = 1; # of cas gene = 9  (type I) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 9816-21515 bp Zoom in on locus 1 x33 Gene: pfam13280:WYL Type: other Location: 9816-10769 bp Gene: pfam01881:cas6 Type: other Location: 10847-11584 bp Gene: cd09665:cas8b2 Type: Subtype-I-B Location: 11590-13440 bp Gene: cd09687:cas7 Type: Subtype-I-B Location: 13442-14356 bp Gene: cd09693:cas5 Type: Type-I Location: 14358-15059 bp Gene: COG1203:cas3 Type: Type-I Location: 15070-17391 bp Gene: pfam01930:cas4 Type: Type-I Location: 17406-17957 bp Gene: cd09722:cas1 Type: universal Location: 17960-18940 bp Gene: cd09725:cas2 Type: universal Location: 18943-19209 bp CRISPR array Location: 19393-21515 bp Num of repeats: 33 Spacers: s1-s32 CRISPR array Location: 19393-21515 bp Num of repeats: 33 Spacers: s1-s32 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 19393-21515 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 5: FMLD01000020.1 Clostridioides difficile isolate CD105HS26 genome assembly, contig: contig000020, whole genome shotgun sequence

⇒Summary: seq-len = 76062 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 73313-74461 bp Zoom in on locus 1 x18 CRISPR array Location: 73313-74461 bp Num of repeats: 18 Spacers: s1-s17 CRISPR array Location: 73313-74461 bp Num of repeats: 18 Spacers: s1-s17 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 73313-74461 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 6: FMLD01000004.1 Clostridioides difficile isolate CD105HS26 genome assembly, contig: contig000004, whole genome shotgun sequence

⇒Summary: seq-len = 259590 bp; # of CRISPR array = 1; # of cas gene = 8  (type I) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 98667-109620 bp 2 Locus 2: 162223-168711 bp 3 Locus 3: 215457-216271 bp Zoom in on locus 1 Zoom in on locus 2 Zoom in on locus 3 x13 Gene: cd06127:DEDDh Type: Type-I Location: 98667-99173 bp Gene: unk Type: unknown Location: 99332-100000 bp Gene: unk Type: unknown Location: 100413-100919 bp Gene: cd06127:DEDDh Type: Type-I Location: 101283-102320 bp Gene: COG0640:csa3 Type: Subtype-I-A Location: 109135-109620 bp Gene: cd09641:cas3HD Type: Type-I Location: 162223-164631 bp Gene: cd09693:cas5 Type: Type-I Location: 164658-165455 bp Gene: cd09687:cas7 Type: Subtype-I-B Location: 165471-166484 bp Gene: pfam09706:cas8b2 Type: Subtype-I-B Location: 166503-167969 bp Gene: pfam01881:cas6 Type: other Location: 167974-168711 bp CRISPR array Location: 215457-216271 bp Num of repeats: 13 Spacers: s1-s12 CRISPR array Location: 215457-216271 bp Num of repeats: 13 Spacers: s1-s12 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 215457-216271 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)