CRISPRone

CRISPRone report for GCA_900096105.1_ASM90009610v1

♦ Seq 1: FMKY01000005.1 Clostridioides difficile isolate CD105HS9 genome assembly, contig: contig000005, whole genome shotgun sequence

⇒Summary: seq-len = 348670 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 206420-208159 bp Zoom in on locus 1 x27 CRISPR array Location: 206420-208159 bp Num of repeats: 27 Spacers: s1-s26 CRISPR array Location: 206420-208159 bp Num of repeats: 27 Spacers: s1-s26 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 206420-208159 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 2: FMKY01000002.1 Clostridioides difficile isolate CD105HS9 genome assembly, contig: contig000002, whole genome shotgun sequence

⇒Summary: seq-len = 565682 bp; # of CRISPR array = 3; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 77915-78673 bp 2 Locus 2: 195023-195444 bp 3 Locus 3: 398979-399405 bp Zoom in on locus 1 x12 Zoom in on locus 2 x7 Zoom in on locus 3 x7 CRISPR array Location: 77915-78673 bp Num of repeats: 12 Spacers: s1-s11 CRISPR array Location: 77915-78673 bp Num of repeats: 12 Spacers: s1-s11 CRISPR array Location: 195023-195444 bp Num of repeats: 7 Spacers: s12-s17 CRISPR array Location: 195023-195444 bp Num of repeats: 7 Spacers: s12-s17 CRISPR array Location: 398979-399405 bp Num of repeats: 7 Spacers: s18-s23 CRISPR array Location: 398979-399405 bp Num of repeats: 7 Spacers: s18-s23 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 77915-78673 bp]: array | spacers
           [Locus range 195023-195444 bp]: array | spacers
           [Locus range 398979-399405 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 3: FMKY01000018.1 Clostridioides difficile isolate CD105HS9 genome assembly, contig: contig000018, whole genome shotgun sequence

⇒Summary: seq-len = 18778 bp; # of CRISPR array = 2; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 6193-8168 bp Zoom in on locus 1 x9 x13 CRISPR array Location: 6193-6748 bp Num of repeats: 9 Spacers: s1-s8 CRISPR array Location: 6193-6748 bp Num of repeats: 9 Spacers: s1-s8 CRISPR array Location: 7350-8168 bp Num of repeats: 13 Spacers: s9-s20 CRISPR array Location: 7350-8168 bp Num of repeats: 13 Spacers: s9-s20 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 6193-6748 bp]: array | spacers
           [Locus range 7350-8168 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 4: FMKY01000004.1 Clostridioides difficile isolate CD105HS9 genome assembly, contig: contig000004, whole genome shotgun sequence

⇒Summary: seq-len = 528485 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 436963-437188 bp Zoom in on locus 1 x4 CRISPR array Location: 436963-437188 bp Num of repeats: 4 Spacers: s1-s3 CRISPR array Location: 436963-437188 bp Num of repeats: 4 Spacers: s1-s3 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 436963-437188 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 5: FMKY01000003.1 Clostridioides difficile isolate CD105HS9 genome assembly, contig: contig000003, whole genome shotgun sequence

⇒Summary: seq-len = 542872 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 498767-498860 bp Zoom in on locus 1 x2 CRISPR array Location: 498767-498860 bp Num of repeats: 2 Spacers: s1-s1 CRISPR array Location: 498767-498860 bp Num of repeats: 2 Spacers: s1-s1 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 498767-498860 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 6: FMKY01000001.1 Clostridioides difficile isolate CD105HS9 genome assembly, contig: contig000001, whole genome shotgun sequence

⇒Summary: seq-len = 739220 bp; # of CRISPR array = 2; # of cas gene = 6  (type I, III) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 250235-250461 bp 2 Locus 2: 416218-424083 bp 3 Locus 3: 498304-498860 bp Zoom in on locus 1 x4 Zoom in on locus 2 Zoom in on locus 3 x9 CRISPR array Location: 250235-250461 bp Num of repeats: 4 Spacers: s1-s3 CRISPR array Location: 250235-250461 bp Num of repeats: 4 Spacers: s1-s3 Gene: cd09641:cas3HD Type: Type-I Location: 416218-418626 bp Gene: cd09693:cas5 Type: Type-I Location: 418653-419450 bp Gene: cd09687:cas7 Type: Subtype-I-B Location: 419466-420479 bp Gene: pfam09706:cas8b2 Type: Subtype-I-B Location: 420499-421974 bp Gene: pfam01881:cas6 Type: other Location: 421979-422716 bp Gene: mkCas0101:csm2gr11 Type: Subtype-III-D Location: 422974-424083 bp CRISPR array Location: 498304-498860 bp Num of repeats: 9 Spacers: s4-s11 CRISPR array Location: 498304-498860 bp Num of repeats: 9 Spacers: s4-s11 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 250235-250461 bp]: array | spacers
           [Locus range 498304-498860 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)