CRISPRone

CRISPRone report for GCA_900096115.1_ASM90009611v1

♦ Seq 1: FMLV01000003.1 Clostridioides difficile isolate CD105HS12 genome assembly, contig: contig000003, whole genome shotgun sequence

⇒Summary: seq-len = 423196 bp; # of CRISPR array = 1; # of cas gene = 9  (type I) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 248035-258148 bp Zoom in on locus 1 x9 CRISPR array Location: 248035-248583 bp Num of repeats: 9 Spacers: s1-s8 CRISPR array Location: 248035-248583 bp Num of repeats: 9 Spacers: s1-s8 Gene: cd09725:cas2 Type: universal Location: 248767-249033 bp Gene: cd09722:cas1 Type: universal Location: 249036-250016 bp Gene: pfam01930:cas4 Type: Type-I Location: 250100-250537 bp Gene: COG1203:cas3 Type: Type-I Location: 250585-252906 bp Gene: cd09658:cas5 Type: Subtype-I-B Location: 252917-253618 bp Gene: cd09687:cas7 Type: Subtype-I-B Location: 253620-254534 bp Gene: cd09665:cas8b2 Type: Subtype-I-B Location: 254536-256413 bp Gene: pfam01881:cas6 Type: other Location: 256419-257213 bp Gene: pfam13280:WYL Type: other Location: 257234-258148 bp Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 248035-248583 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 2: FMLV01000008.1 Clostridioides difficile isolate CD105HS12 genome assembly, contig: contig000008, whole genome shotgun sequence

⇒Summary: seq-len = 206455 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 114561-115510 bp Zoom in on locus 1 x15 CRISPR array Location: 114561-115510 bp Num of repeats: 15 Spacers: s1-s14 CRISPR array Location: 114561-115510 bp Num of repeats: 15 Spacers: s1-s14 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 114561-115510 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 3: FMLV01000007.1 Clostridioides difficile isolate CD105HS12 genome assembly, contig: contig000007, whole genome shotgun sequence

⇒Summary: seq-len = 250896 bp; # of CRISPR array = 2; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 56619-57831 bp 2 Locus 2: 231407-231898 bp Zoom in on locus 1 x19 Zoom in on locus 2 x8 CRISPR array Location: 56619-57831 bp Num of repeats: 19 Spacers: s1-s18 CRISPR array Location: 56619-57831 bp Num of repeats: 19 Spacers: s1-s18 CRISPR array Location: 231407-231898 bp Num of repeats: 8 Spacers: s19-s25 CRISPR array Location: 231407-231898 bp Num of repeats: 8 Spacers: s19-s25 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 56619-57831 bp]: array | spacers
           [Locus range 231407-231898 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 4: FMLV01000002.1 Clostridioides difficile isolate CD105HS12 genome assembly, contig: contig000002, whole genome shotgun sequence

⇒Summary: seq-len = 588316 bp; # of CRISPR array = 2; # of cas gene = 6  (type I, III) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 244663-245159 bp 2 Locus 2: 318441-326306 bp 3 Locus 3: 491832-492254 bp Zoom in on locus 1 x8 Zoom in on locus 2 Zoom in on locus 3 x7 CRISPR array Location: 244663-245159 bp Num of repeats: 8 Spacers: s1-s7 CRISPR array Location: 244663-245159 bp Num of repeats: 8 Spacers: s1-s7 Gene: mkCas0101:csm2gr11 Type: Subtype-III-D Location: 318441-319550 bp Gene: pfam01881:cas6 Type: other Location: 319808-320545 bp Gene: pfam09706:cas8b2 Type: Subtype-I-B Location: 320550-322025 bp Gene: cd09687:cas7 Type: Subtype-I-B Location: 322045-323058 bp Gene: cd09693:cas5 Type: Type-I Location: 323074-323871 bp Gene: cd09641:cas3HD Type: Type-I Location: 323898-326306 bp CRISPR array Location: 491832-492254 bp Num of repeats: 7 Spacers: s8-s13 CRISPR array Location: 491832-492254 bp Num of repeats: 7 Spacers: s8-s13 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 244663-245159 bp]: array | spacers
           [Locus range 491832-492254 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)