CRISPRone

CRISPRone report for GCA_900096125.1_ASM90009612v1

♦ Seq 1: FMKN01000014.1 Clostridioides difficile isolate CD105HS31 genome assembly, contig: contig000014, whole genome shotgun sequence

⇒Summary: seq-len = 114807 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 18390-18685 bp Zoom in on locus 1 x5 CRISPR array Location: 18390-18685 bp Num of repeats: 5 Spacers: s1-s4 CRISPR array Location: 18390-18685 bp Num of repeats: 5 Spacers: s1-s4 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 18390-18685 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 2: FMKN01000023.1 Clostridioides difficile isolate CD105HS31 genome assembly, contig: contig000023, whole genome shotgun sequence

⇒Summary: seq-len = 12169 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 4738-4968 bp Zoom in on locus 1 x4 CRISPR array Location: 4738-4968 bp Num of repeats: 4 Spacers: s1-s3 CRISPR array Location: 4738-4968 bp Num of repeats: 4 Spacers: s1-s3 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 4738-4968 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 3: FMKN01000005.1 Clostridioides difficile isolate CD105HS31 genome assembly, contig: contig000005, whole genome shotgun sequence

⇒Summary: seq-len = 211449 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 118910-120458 bp Zoom in on locus 1 x24 CRISPR array Location: 118910-120458 bp Num of repeats: 24 Spacers: s1-s23 CRISPR array Location: 118910-120458 bp Num of repeats: 24 Spacers: s1-s23 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 118910-120458 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 4: FMKN01000013.1 Clostridioides difficile isolate CD105HS31 genome assembly, contig: contig000013, whole genome shotgun sequence

⇒Summary: seq-len = 120298 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 57355-59570 bp Zoom in on locus 1 x34 CRISPR array Location: 57355-59570 bp Num of repeats: 34 Spacers: s1-s33 CRISPR array Location: 57355-59570 bp Num of repeats: 34 Spacers: s1-s33 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 57355-59570 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 5: FMKN01000002.1 Clostridioides difficile isolate CD105HS31 genome assembly, contig: contig000002, whole genome shotgun sequence

⇒Summary: seq-len = 632994 bp; # of CRISPR array = 1; # of cas gene = 5  (type I) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 168152-174675 bp Zoom in on locus 1 x10 Gene: cd09693:cas5 Type: Type-I Location: 168152-168799 bp Gene: pfam01881:cas6 Type: other Location: 168790-169554 bp Gene: cd09754:cas8b2 Type: Subtype-I-B Location: 169556-170722 bp Gene: cd09687:cas7 Type: Subtype-I-B Location: 170743-171813 bp Gene: COG1203:cas3 Type: Type-I Location: 171824-173800 bp CRISPR array Location: 174053-174675 bp Num of repeats: 10 Spacers: s1-s9 CRISPR array Location: 174053-174675 bp Num of repeats: 10 Spacers: s1-s9 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 174053-174675 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 6: FMKN01000006.1 Clostridioides difficile isolate CD105HS31 genome assembly, contig: contig000006, whole genome shotgun sequence

⇒Summary: seq-len = 205332 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 189971-190131 bp Zoom in on locus 1 x3 CRISPR array Location: 189971-190131 bp Num of repeats: 3 Spacers: s1-s2 CRISPR array Location: 189971-190131 bp Num of repeats: 3 Spacers: s1-s2 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 189971-190131 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 7: FMKN01000001.1 Clostridioides difficile isolate CD105HS31 genome assembly, contig: contig000001, whole genome shotgun sequence

⇒Summary: seq-len = 1093011 bp; # of CRISPR array = 2; # of cas gene = 6  (type I, III) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 596202-597418 bp 2 Locus 2: 762819-771137 bp 3 Locus 3: 844421-845043 bp Zoom in on locus 1 x19 Zoom in on locus 2 Zoom in on locus 3 x10 CRISPR array Location: 596202-597418 bp Num of repeats: 19 Spacers: s1-s18 CRISPR array Location: 596202-597418 bp Num of repeats: 19 Spacers: s1-s18 Gene: cd09641:cas3HD Type: Type-I Location: 762819-765227 bp Gene: cd09693:cas5 Type: Type-I Location: 765254-766051 bp Gene: cd09687:cas7 Type: Subtype-I-B Location: 766067-767080 bp Gene: pfam09706:cas8b2 Type: Subtype-I-B Location: 767100-768575 bp Gene: pfam01881:cas6 Type: other Location: 768580-769317 bp Gene: unk Type: unknown Location: 769418-769594 bp Gene: mkCas0101:csm2gr11 Type: Subtype-III-D Location: 770028-771137 bp CRISPR array Location: 844421-845043 bp Num of repeats: 10 Spacers: s19-s27 CRISPR array Location: 844421-845043 bp Num of repeats: 10 Spacers: s19-s27 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 596202-597418 bp]: array | spacers
           [Locus range 844421-845043 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)