CRISPRone

CRISPRone report for GCA_900096135.1_ASM90009613v1

♦ Seq 1: FMKR01000001.1 Clostridioides difficile isolate CD105HS34 genome assembly, contig: contig000001, whole genome shotgun sequence

⇒Summary: seq-len = 530767 bp; # of CRISPR array = 2; # of cas gene = 9  (type I) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 44683-44777 bp 2 Locus 2: 267007-278118 bp Zoom in on locus 1 x2 Zoom in on locus 2 x25 CRISPR array Location: 44683-44777 bp Num of repeats: 2 Spacers: s1-s1 CRISPR array Location: 44683-44777 bp Num of repeats: 2 Spacers: s1-s1 Gene: pfam13280:WYL Type: other Location: 267007-267894 bp Gene: pfam01881:cas6 Type: other Location: 267972-268709 bp Gene: cd09665:cas8b2 Type: Subtype-I-B Location: 268715-270565 bp Gene: cd09687:cas7 Type: Subtype-I-B Location: 270567-271481 bp Gene: cd09658:cas5 Type: Subtype-I-B Location: 271483-272184 bp Gene: COG1203:cas3 Type: Type-I Location: 272195-274516 bp Gene: pfam01930:cas4 Type: Type-I Location: 274531-275082 bp Gene: cd09722:cas1 Type: universal Location: 275085-276065 bp Gene: cd09725:cas2 Type: universal Location: 276068-276334 bp CRISPR array Location: 276518-278118 bp Num of repeats: 25 Spacers: s2-s25 CRISPR array Location: 276518-278118 bp Num of repeats: 25 Spacers: s2-s25 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 44683-44777 bp]: array | spacers
           [Locus range 276518-278118 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 2: FMKR01000019.1 Clostridioides difficile isolate CD105HS34 genome assembly, contig: contig000019, whole genome shotgun sequence

⇒Summary: seq-len = 68292 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 3473-4623 bp Zoom in on locus 1 x18 CRISPR array Location: 3473-4623 bp Num of repeats: 18 Spacers: s1-s17 CRISPR array Location: 3473-4623 bp Num of repeats: 18 Spacers: s1-s17 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 3473-4623 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 3: FMKR01000005.1 Clostridioides difficile isolate CD105HS34 genome assembly, contig: contig000005, whole genome shotgun sequence

⇒Summary: seq-len = 246975 bp; # of CRISPR array = 4; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 17949-18706 bp 2 Locus 2: 109434-114365 bp Zoom in on locus 1 x12 Zoom in on locus 2 x7 x4 x14 CRISPR array Location: 17949-18706 bp Num of repeats: 12 Spacers: s1-s11 CRISPR array Location: 17949-18706 bp Num of repeats: 12 Spacers: s1-s11 CRISPR array Location: 109434-109858 bp Num of repeats: 7 Spacers: s12-s17 CRISPR array Location: 109434-109858 bp Num of repeats: 7 Spacers: s12-s17 CRISPR array Location: 111462-111686 bp Num of repeats: 4 Spacers: s18-s20 CRISPR array Location: 111462-111686 bp Num of repeats: 4 Spacers: s18-s20 CRISPR array Location: 113479-114365 bp Num of repeats: 14 Spacers: s21-s33 CRISPR array Location: 113479-114365 bp Num of repeats: 14 Spacers: s21-s33 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 17949-18706 bp]: array | spacers
           [Locus range 109434-109858 bp]: array | spacers
           [Locus range 111462-111686 bp]: array | spacers
           [Locus range 113479-114365 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 4: FMKR01000002.1 Clostridioides difficile isolate CD105HS34 genome assembly, contig: contig000002, whole genome shotgun sequence

⇒Summary: seq-len = 375859 bp; # of CRISPR array = 2; # of cas gene = 6  (type I, III) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 84673-85289 bp 2 Locus 2: 248561-256882 bp 3 Locus 3: 330165-330522 bp Zoom in on locus 1 x10 Zoom in on locus 2 Zoom in on locus 3 x6 CRISPR array Location: 84673-85289 bp Num of repeats: 10 Spacers: s1-s9 CRISPR array Location: 84673-85289 bp Num of repeats: 10 Spacers: s1-s9 Gene: cd09641:cas3HD Type: Type-I Location: 248561-250969 bp Gene: cd09693:cas5 Type: Type-I Location: 250996-251793 bp Gene: cd09687:cas7 Type: Subtype-I-B Location: 251809-252825 bp Gene: pfam09706:cas8b2 Type: Subtype-I-B Location: 252845-254320 bp Gene: pfam01881:cas6 Type: other Location: 254325-255062 bp Gene: unk Type: unknown Location: 255163-255339 bp Gene: mkCas0101:csm2gr11 Type: Subtype-III-D Location: 255773-256882 bp CRISPR array Location: 330165-330522 bp Num of repeats: 6 Spacers: s10-s14 CRISPR array Location: 330165-330522 bp Num of repeats: 6 Spacers: s10-s14 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 84673-85289 bp]: array | spacers
           [Locus range 330165-330522 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 5: FMKR01000007.1 Clostridioides difficile isolate CD105HS34 genome assembly, contig: contig000007, whole genome shotgun sequence

⇒Summary: seq-len = 216043 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 124574-125133 bp Zoom in on locus 1 x9 CRISPR array Location: 124574-125133 bp Num of repeats: 9 Spacers: s1-s8 CRISPR array Location: 124574-125133 bp Num of repeats: 9 Spacers: s1-s8 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 124574-125133 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 6: FMKR01000009.1 Clostridioides difficile isolate CD105HS34 genome assembly, contig: contig000009, whole genome shotgun sequence

⇒Summary: seq-len = 202242 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 110268-110428 bp Zoom in on locus 1 x3 CRISPR array Location: 110268-110428 bp Num of repeats: 3 Spacers: s1-s2 CRISPR array Location: 110268-110428 bp Num of repeats: 3 Spacers: s1-s2 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 110268-110428 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)