CRISPRone

CRISPRone report for GCA_900096145.1_ASM90009614v1

♦ Seq 1: FMKP01000002.1 Clostridioides difficile isolate CD105HS38 genome assembly, contig: contig000002, whole genome shotgun sequence

⇒Summary: seq-len = 644437 bp; # of CRISPR array = 3; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 189572-189799 bp 2 Locus 2: 397941-398362 bp 3 Locus 3: 508662-508889 bp Zoom in on locus 1 x4 Zoom in on locus 2 x7 Zoom in on locus 3 x4 CRISPR array Location: 189572-189799 bp Num of repeats: 4 Spacers: s1-s3 CRISPR array Location: 189572-189799 bp Num of repeats: 4 Spacers: s1-s3 CRISPR array Location: 397941-398362 bp Num of repeats: 7 Spacers: s4-s9 CRISPR array Location: 397941-398362 bp Num of repeats: 7 Spacers: s4-s9 CRISPR array Location: 508662-508889 bp Num of repeats: 4 Spacers: s10-s12 CRISPR array Location: 508662-508889 bp Num of repeats: 4 Spacers: s10-s12 Sorry, your browser does not support inline SVG.

Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 189572-189799 bp]: array | spacers
           [Locus range 397941-398362 bp]: array | spacers
           [Locus range 508662-508889 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 2: FMKP01000001.1 Clostridioides difficile isolate CD105HS38 genome assembly, contig: contig000001, whole genome shotgun sequence

⇒Summary: seq-len = 1202576 bp; # of CRISPR array = 5; # of cas gene = 14  (type I, III) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 244757-245315 bp 2 Locus 2: 318562-326427 bp 3 Locus 3: 488395-489081 bp 4 Locus 4: 678583-690508 bp 5 Locus 5: 845928-846090 bp 6 Locus 6: 1163962-1164322 bp Zoom in on locus 1 x9 Zoom in on locus 2 Zoom in on locus 3 x11 Zoom in on locus 4 x44 Zoom in on locus 5 x3 Zoom in on locus 6 x6 CRISPR array Location: 244757-245315 bp Num of repeats: 9 Spacers: s1-s8 CRISPR array Location: 244757-245315 bp Num of repeats: 9 Spacers: s1-s8 Gene: mkCas0101:csm2gr11 Type: Subtype-III-D Location: 318562-319671 bp Gene: pfam01881:cas6 Type: other Location: 319929-320666 bp Gene: pfam09706:cas8b2 Type: Subtype-I-B Location: 320671-322146 bp Gene: cd09687:cas7 Type: Subtype-I-B Location: 322166-323179 bp Gene: cd09693:cas5 Type: Type-I Location: 323195-323992 bp Gene: cd09641:cas3HD Type: Type-I Location: 324019-326427 bp CRISPR array Location: 488395-489081 bp Num of repeats: 11 Spacers: s9-s18 CRISPR array Location: 488395-489081 bp Num of repeats: 11 Spacers: s9-s18 Gene: cd09652:cas6 Type: other Location: 678583-679278 bp Gene: mkCas0106:cas8b1 Type: Subtype-I-B Location: 679290-681029 bp Gene: pfam05107:cas7b Type: Type-I Location: 681022-682011 bp Gene: cd09693:cas5 Type: Type-I Location: 682013-682753 bp Gene: cd09641:cas3HD Type: Type-I Location: 682777-685335 bp CRISPR array Location: 685525-688396 bp Num of repeats: 44 Spacers: s19-s61 CRISPR array Location: 685525-688396 bp Num of repeats: 44 Spacers: s19-s61 Gene: pfam01930:cas4 Type: Type-I Location: 688480-688974 bp Gene: cd09722:cas1 Type: universal Location: 689000-690007 bp Gene: cd09725:cas2 Type: universal Location: 690218-690508 bp CRISPR array Location: 845928-846090 bp Num of repeats: 3 Spacers: s62-s63 CRISPR array Location: 845928-846090 bp Num of repeats: 3 Spacers: s62-s63 CRISPR array Location: 1163962-1164322 bp Num of repeats: 6 Spacers: s64-s68 CRISPR array Location: 1163962-1164322 bp Num of repeats: 6 Spacers: s64-s68 Sorry, your browser does not support inline SVG.

Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 244757-245315 bp]: array | spacers
           [Locus range 488395-489081 bp]: array | spacers
           [Locus range 685525-688396 bp]: array | spacers
           [Locus range 845928-846090 bp]: array | spacers
           [Locus range 1163962-1164322 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)