CRISPRone

CRISPRone report for GCA_900096155.1_ASM90009615v1

♦ Seq 1: FMKG01000006.1 Clostridioides difficile isolate CD105HS40 genome assembly, contig: contig000006, whole genome shotgun sequence

⇒Summary: seq-len = 230298 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 140465-140690 bp Zoom in on locus 1 x4 CRISPR array Location: 140465-140690 bp Num of repeats: 4 Spacers: s1-s3 CRISPR array Location: 140465-140690 bp Num of repeats: 4 Spacers: s1-s3 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 140465-140690 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 2: FMKG01000002.1 Clostridioides difficile isolate CD105HS40 genome assembly, contig: contig000002, whole genome shotgun sequence

⇒Summary: seq-len = 563678 bp; # of CRISPR array = 3; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 164237-164664 bp 2 Locus 2: 368198-368620 bp 3 Locus 3: 485002-485761 bp Zoom in on locus 1 x7 Zoom in on locus 2 x7 Zoom in on locus 3 x12 CRISPR array Location: 164237-164664 bp Num of repeats: 7 Spacers: s1-s6 CRISPR array Location: 164237-164664 bp Num of repeats: 7 Spacers: s1-s6 CRISPR array Location: 368198-368620 bp Num of repeats: 7 Spacers: s7-s12 CRISPR array Location: 368198-368620 bp Num of repeats: 7 Spacers: s7-s12 CRISPR array Location: 485002-485761 bp Num of repeats: 12 Spacers: s13-s23 CRISPR array Location: 485002-485761 bp Num of repeats: 12 Spacers: s13-s23 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 164237-164664 bp]: array | spacers
           [Locus range 368198-368620 bp]: array | spacers
           [Locus range 485002-485761 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 3: FMKG01000007.1 Clostridioides difficile isolate CD105HS40 genome assembly, contig: contig000007, whole genome shotgun sequence

⇒Summary: seq-len = 190715 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 140616-142356 bp Zoom in on locus 1 x27 CRISPR array Location: 140616-142356 bp Num of repeats: 27 Spacers: s1-s26 CRISPR array Location: 140616-142356 bp Num of repeats: 27 Spacers: s1-s26 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 140616-142356 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 4: FMKG01000001.1 Clostridioides difficile isolate CD105HS40 genome assembly, contig: contig000001, whole genome shotgun sequence

⇒Summary: seq-len = 739237 bp; # of CRISPR array = 2; # of cas gene = 6  (type I, III) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 240363-240920 bp 2 Locus 2: 315140-323005 bp 3 Locus 3: 488762-488989 bp Zoom in on locus 1 x9 Zoom in on locus 2 Zoom in on locus 3 x4 CRISPR array Location: 240363-240920 bp Num of repeats: 9 Spacers: s1-s8 CRISPR array Location: 240363-240920 bp Num of repeats: 9 Spacers: s1-s8 Gene: mkCas0101:csm2gr11 Type: Subtype-III-D Location: 315140-316249 bp Gene: pfam01881:cas6 Type: other Location: 316507-317244 bp Gene: pfam09706:cas8b2 Type: Subtype-I-B Location: 317249-318724 bp Gene: cd09687:cas7 Type: Subtype-I-B Location: 318744-319757 bp Gene: cd09693:cas5 Type: Type-I Location: 319773-320570 bp Gene: cd09641:cas3HD Type: Type-I Location: 320597-323005 bp CRISPR array Location: 488762-488989 bp Num of repeats: 4 Spacers: s9-s11 CRISPR array Location: 488762-488989 bp Num of repeats: 4 Spacers: s9-s11 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 240363-240920 bp]: array | spacers
           [Locus range 488762-488989 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 5: FMKG01000020.1 Clostridioides difficile isolate CD105HS40 genome assembly, contig: contig000020, whole genome shotgun sequence

⇒Summary: seq-len = 18462 bp; # of CRISPR array = 2; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 6261-8236 bp Zoom in on locus 1 x9 x13 CRISPR array Location: 6261-6816 bp Num of repeats: 9 Spacers: s1-s8 CRISPR array Location: 6261-6816 bp Num of repeats: 9 Spacers: s1-s8 CRISPR array Location: 7418-8236 bp Num of repeats: 13 Spacers: s9-s20 CRISPR array Location: 7418-8236 bp Num of repeats: 13 Spacers: s9-s20 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 6261-6816 bp]: array | spacers
           [Locus range 7418-8236 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 6: FMKG01000003.1 Clostridioides difficile isolate CD105HS40 genome assembly, contig: contig000003, whole genome shotgun sequence

⇒Summary: seq-len = 543031 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 43954-44048 bp Zoom in on locus 1 x2 CRISPR array Location: 43954-44048 bp Num of repeats: 2 Spacers: s1-s1 CRISPR array Location: 43954-44048 bp Num of repeats: 2 Spacers: s1-s1 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 43954-44048 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)