CRISPRone

CRISPRone report for GCA_900096175.1_ASM90009617v1

♦ Seq 1: FMKL01000012.1 Clostridioides difficile isolate CD105HS24 genome assembly, contig: contig000012, whole genome shotgun sequence

⇒Summary: seq-len = 131741 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 112951-113442 bp Zoom in on locus 1 x8 CRISPR array Location: 112951-113442 bp Num of repeats: 8 Spacers: s1-s7 CRISPR array Location: 112951-113442 bp Num of repeats: 8 Spacers: s1-s7 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 112951-113442 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 2: FMKL01000020.1 Clostridioides difficile isolate CD105HS24 genome assembly, contig: contig000020, whole genome shotgun sequence

⇒Summary: seq-len = 30745 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 14121-14544 bp Zoom in on locus 1 x7 CRISPR array Location: 14121-14544 bp Num of repeats: 7 Spacers: s1-s6 CRISPR array Location: 14121-14544 bp Num of repeats: 7 Spacers: s1-s6 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 14121-14544 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 3: FMKL01000006.1 Clostridioides difficile isolate CD105HS24 genome assembly, contig: contig000006, whole genome shotgun sequence

⇒Summary: seq-len = 209957 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 20458-20685 bp Zoom in on locus 1 x4 CRISPR array Location: 20458-20685 bp Num of repeats: 4 Spacers: s1-s3 CRISPR array Location: 20458-20685 bp Num of repeats: 4 Spacers: s1-s3 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 20458-20685 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 4: FMKL01000005.1 Clostridioides difficile isolate CD105HS24 genome assembly, contig: contig000005, whole genome shotgun sequence

⇒Summary: seq-len = 214744 bp; # of CRISPR array = 1; # of cas gene = 9  (type I) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 165682-175769 bp Zoom in on locus 1 x9 Gene: pfam13280:WYL Type: other Location: 165682-166569 bp Gene: pfam01881:cas6 Type: other Location: 166647-167384 bp Gene: cd09665:cas8b2 Type: Subtype-I-B Location: 167390-169267 bp Gene: cd09687:cas7 Type: Subtype-I-B Location: 169269-170183 bp Gene: cd09658:cas5 Type: Subtype-I-B Location: 170185-170886 bp Gene: COG1203:cas3 Type: Type-I Location: 170897-173218 bp Gene: pfam01930:cas4 Type: Type-I Location: 173233-173703 bp Gene: cd09722:cas1 Type: universal Location: 173787-174767 bp Gene: cd09725:cas2 Type: universal Location: 174770-175036 bp CRISPR array Location: 175220-175769 bp Num of repeats: 9 Spacers: s1-s8 CRISPR array Location: 175220-175769 bp Num of repeats: 9 Spacers: s1-s8 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 175220-175769 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 5: FMKL01000001.1 Clostridioides difficile isolate CD105HS24 genome assembly, contig: contig000001, whole genome shotgun sequence

⇒Summary: seq-len = 1240703 bp; # of CRISPR array = 5; # of cas gene = 6  (type I, III) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 1967-7636 bp 2 Locus 2: 748219-748640 bp 3 Locus 3: 914183-922048 bp 4 Locus 4: 995379-995940 bp Zoom in on locus 1 x5 x5 x2 Zoom in on locus 2 x7 Zoom in on locus 3 Zoom in on locus 4 x9 CRISPR array Location: 1967-2260 bp Num of repeats: 5 Spacers: s1-s4 CRISPR array Location: 1967-2260 bp Num of repeats: 5 Spacers: s1-s4 CRISPR array Location: 4903-5196 bp Num of repeats: 5 Spacers: s5-s8 CRISPR array Location: 4903-5196 bp Num of repeats: 5 Spacers: s5-s8 CRISPR array Location: 7543-7636 bp Num of repeats: 2 Spacers: s9-s9 CRISPR array Location: 7543-7636 bp Num of repeats: 2 Spacers: s9-s9 CRISPR array Location: 748219-748640 bp Num of repeats: 7 Spacers: s10-s15 CRISPR array Location: 748219-748640 bp Num of repeats: 7 Spacers: s10-s15 Gene: cd09641:cas3HD Type: Type-I Location: 914183-916591 bp Gene: cd09693:cas5 Type: Type-I Location: 916618-917415 bp Gene: cd09687:cas7 Type: Subtype-I-B Location: 917431-918444 bp Gene: pfam09706:cas8b2 Type: Subtype-I-B Location: 918464-919939 bp Gene: pfam01881:cas6 Type: other Location: 919944-920681 bp Gene: mkCas0101:csm2gr11 Type: Subtype-III-D Location: 920939-922048 bp CRISPR array Location: 995379-995940 bp Num of repeats: 9 Spacers: s16-s23 CRISPR array Location: 995379-995940 bp Num of repeats: 9 Spacers: s16-s23 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 1967-2260 bp]: array | spacers
           [Locus range 4903-5196 bp]: array | spacers
           [Locus range 7543-7636 bp]: array | spacers
           [Locus range 748219-748640 bp]: array | spacers
           [Locus range 995379-995940 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 6: FMKL01000007.1 Clostridioides difficile isolate CD105HS24 genome assembly, contig: contig000007, whole genome shotgun sequence

⇒Summary: seq-len = 206435 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 114558-115442 bp Zoom in on locus 1 x14 CRISPR array Location: 114558-115442 bp Num of repeats: 14 Spacers: s1-s13 CRISPR array Location: 114558-115442 bp Num of repeats: 14 Spacers: s1-s13 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 114558-115442 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 7: FMKL01000013.1 Clostridioides difficile isolate CD105HS24 genome assembly, contig: contig000013, whole genome shotgun sequence

⇒Summary: seq-len = 118538 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 60773-61921 bp Zoom in on locus 1 x18 CRISPR array Location: 60773-61921 bp Num of repeats: 18 Spacers: s1-s17 CRISPR array Location: 60773-61921 bp Num of repeats: 18 Spacers: s1-s17 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 60773-61921 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)